BAC Information

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BAC

Clone NameMSMg01-434A08
Chromosome19 (Build37)
Map Location 33,724,531 - 33,724,849
singlet/doubletsinglet
Overlap genenone
Upstream genePapss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106
Downstream geneEG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434A08.T7 (MSMg01no434_a08.b1)MSMg01-434A08.TJ (MSMg01no434_a08.g1)
ACCAG525667AG525668
length747746
length of high quality
(start - end)
411 (38 - 448)512 (67 - 578)
definitionCHROMAT_FILE: MSMg01no434_a08.b1 PHD_FILE: MSMg01no434_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:18 2005CHROMAT_FILE: MSMg01no434_a08.g1 PHD_FILE: MSMg01no434_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGA
GCGGTATTCCACCACCTAACTGGTTGTGATTGTGAATAACATTCCCTCAG
CTTTACAAAATAAATTACCAAGGATAAAATTGCATAAAGATATTTTGTTG
TACAGAGTGGAACTGTACAACCATCCCAGGAAGTTTGGTAAGGTAGAGCA
TGTTGAGACCTGGAGACTCAGTGAACACATACCAGATACTTAGGTAATTC
CTTGGTCCCTGCCAGATTCCTGGCTTGGAACACATGCCACACTCCTCACA
TAGGGAACTGTGATCTGTGGTCATGTATGCAAAGAACAGAGTTCTCCATG
GTGAGTTACCTAGAGGCCCAGAGGGCTTAGCAAATAAGCTTTCCTTCCTA
GCCATTCCTCCCTGCAAAAGGTATTTAATCTCAGGTGCACCCTGAGAAGT
GGTAAGACACAGTACGCATTCATTTCCCACCATGAATAGAAAATAAACTG
TTTAGAACCATACAGTGTCTCTTTCATCAAGATCCACAGTGCACAGCCTT
GTACAAATTATTTGACTTCCGAGCCATGGCTTTATTTTTCCTATATTAAC
CTCTCTGCGCTTTCAGCCTTGCCTCCACTATGTTAAAGGTTTGTATCCAT
TGAATACCATCTTTAGCTTCTTTTTTCACCCACTTTCCCGTTTTTATTGC
CTTTTCCCCTACCCCTGTTGTCCCCCTATTTTCTACCTCTTTTCTTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAACTATATTTCAGAGTAATTTAGTTGCTCTTTG
GATTAATATTTTATGTAATAAAATTTGTACCCTTCATATATAATTTCATT
TACATAATTGTTCTTGAATTTTACACAATATAAGACTTTTCAGAAAATGT
TAAGTTAGTGTTATGTTGAATATTATTTGTATCTAAAAATAGAAAAATTT
AAGCGATTATAATGATCAGGAGTAAATAACAGAAACCAATGTTAAGGGAG
TTACAGAATCCAGAATAGATTTTTATCAACAAACTAACTTAAAGCAACAT
ATCTTAGGATGTAAAATATTCTGATTTATTGATAATGGGATAATAGAATA
GAAATTTTCATACCATTAAGACAGATAACATGTAATGTTTAGAATTATGT
GGTAGATCTTTGAACAGAATTAAAAAACAAAACAAAACAAAAAACCAAAA
AAACCTTCTAAGATGACTTGTTCCCTTTTTAGGTACCCATTTACCTCTTG
TCAAATGACATGAGTATAATCACCTGGCTCTATCCCCAATGTTTTGGCTG
ACACTTAGGAGAATATGTAGGTATACAAGGCTTCCCTATTTACTCTTAGT
ACCTCCTGGCCCCTTTTTTTTTTCTCCTTTAAATCAGTTCCCGGTATTTC
ATTTTCTAAAGTTGATGTTTCCCCTTATGCATATCTTCTGTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_a08.b1 MSMg01no434_a08.b1 CHROMAT_FILE:
MSMg01no434_a08.b1 PHD_FILE: MSMg01no434_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:18 2005
         (411 letters)



>mm_chr19_33724531_33725341
          Length = 811

 Score =  582 bits (301), Expect = e-170
 Identities = 315/321 (98%), Gaps = 4/321 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagcggta--ttccaccacctaactggttgtgattgtgaataacattccctca 62
           |||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaattctgagcggtaattt--accacctaactggttgtgattgtgaataacattccctca 262

                                                                       
Query: 63  gctttacaaaataaattaccaaggataaaattgcataaagatattttgttgtacagagtg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttacaaaataaattaccaaggataaaattgcataaagatattttgttgtacagagtg 202

                                                                       
Query: 123 gaactgtacaaccatcccaggaagtttggtaaggtagagcatgttgagacctggagactc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaactgtacaaccatcccaggaagtttggtaaggtagagcatgttgagacctggagactc 142

                                                                       
Query: 183 agtgaacacataccagatacttaggtaattccttggtccctgccagattcctggcttgga 242
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 141 agtgaacacataccagatacttaggtaattccttggtccctgcaagattcctggcttgga 82

                                                                       
Query: 243 acacatgccacactcctcacatagggaactgtgatctgtggtcatgtatgcaaagaacag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  acacatgccacactcctcacatagggaactgtgatctgtggtcatgtatgcaaagaacag 22

                                
Query: 303 agttctccatggtgagttacc 323
           ||||||||||| |||||||||
Sbjct: 21  agttctccatgttgagttacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)