Query= MSMg01no434_i13.b1 MSMg01no434_i13.b1 CHROMAT_FILE:
MSMg01no434_i13.b1 PHD_FILE: MSMg01no434_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:59 2005
(244 letters)
>mm_chr19_58872230_58872873
Length = 644
Score = 395 bits (204), Expect = e-114
Identities = 230/244 (94%), Gaps = 9/244 (3%)
Strand = Plus / Plus
Query: 1 actgcagacccagagtctgcgttgtctggaagggattaggttcaggaccctgctcctgac 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 210 actgcagacccagagtctg---------gaagggattaggttcaggaccctgctcctgac 260
Query: 61 aagcaccagcgattctgaggccggagagccgcaggcctgccttcacgggtctaggtttac 120
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aagcaccagcgattctgaggctggagagccacaggcctgccttcacgggtctaggtttac 320
Query: 121 gtactgcttttaggtgaatgtgaaaagctgcaggtttgatggagacatttcatggaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gtactgcttttaggtgaatgtgaaaagctgcaggtttgatggagacatttcatggaatag 380
Query: 181 aacctcctttaatatgtccttatggtgggattaagaagagggggaaggaaggggttaact 240
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aacctcctttaatatttccttatggtgggattaagaagagggggaaggaaagggttaact 440
Query: 241 gaaa 244
||||
Sbjct: 441 gaaa 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no434_i13.g1 MSMg01no434_i13.g1 CHROMAT_FILE:
MSMg01no434_i13.g1 PHD_FILE: MSMg01no434_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:59 2005
(247 letters)
>mm_chr19_59027830_59028471
Length = 642
Score = 383 bits (198), Expect = e-111
Identities = 233/250 (93%), Gaps = 11/250 (4%)
Strand = Plus / Minus
Query: 1 aagaggccggaaggggctgctctctcaaatcccgacttagggtgcggtgcggcaccccaa 60
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 442 aagaggccggaaggggctgctctctcaaatcctgacttag-----ggtgcggcaccccaa 388
Query: 61 catacagcttgctttaactggactgttgtcggtttgatctttccctccaggtgattctca 120
||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct: 387 catacagcttgctttaactggac---agtccgtttgatctctccctccaggtgattctca 331
Query: 121 ggtttaacagatatgcaaacagagctttacctccatcaaagcaggctctttactgtgggg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 330 ggtttaacagatatgcaaacagagctttacctccatcaaagcagactctttactgtgggg 271
Query: 181 gc---ttttttttttttttttttgattgcttcatggaaactttcaagcaggtggcaaatt 237
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 270 gctttttttttttttttttttttgattgcttcatggaaactttcaaggaggtggcaaatt 211
Query: 238 cctgccctcc 247
||||||||||
Sbjct: 210 cctgccctcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 642
Length adjustment: 9
Effective length of query: 238
Effective length of database: 633
Effective search space: 150654
Effective search space used: 150654
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
