BAC Information

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BAC

Clone NameMSMg01-435A24
Chromosome19 (Build37)
Map Location 13,441,122 - 13,441,690
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467
Downstream geneOlfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435A24.T7 (MSMg01no435_a24.b1)MSMg01-435A24.TJ (MSMg01no435_a24.g1)
ACCAG526454AG526455
length774799
length of high quality
(start - end)
570 (39 - 608)237 (70 - 306)
definitionCHROMAT_FILE: MSMg01no435_a24.b1 PHD_FILE: MSMg01no435_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:39 2005CHROMAT_FILE: MSMg01no435_a24.g1 PHD_FILE: MSMg01no435_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TTTCATTTATCAATTATTAAATGACAGTGACTTCTTTGCACATTTTACTG
AAATATGTACTATACTGACACCTCTTTTTGATTAGTATTTCTCTTTGACC
ATGTCTTTTTATTTTATTTTCAGAAGGATAATTTGTCAGAGTAGCCAGAA
ATGTAATAATTTTAAAAGTTAATGTTTTCATCTGTTACTAAATTTTCTAG
ACTATTTATATCAAATAGAATGGTAATGTACTTTCATTTCTGAAAGAGCC
ATTTCTTTCCTGCATTAGATAAGTTTGCATTCTCTTTTACCATGTTACCA
GTCATATCATTGCTTGTTCTTATGGTTACAATTATAATCTTGCTTCAGCA
CCATTGCACGTCCCTTTGAGAAAGGCTCTTATTACTTTCAGGCCCTTGGT
CAAATGTTCCTTCTATCATCTTCATGAAAGAACTATGTGCAACTGACTGC
ATAAACTATCTTCTGACTTCATTTAGGTAGNTTTTTTCTTTTTCTTTTTC
TTTTTCTTTTTCTTTTTCTTTTTCTGGTTCTTTTTCTTTTTCTTTTTCTT
TTTCTCTTTCTCTTTCTCTTTCTCTTTTCTTTTCTCTTTCCTTTTCTTTC
CCTTTCTCTTTCTTTATTGGGTTTATTTATNTAATTTTTTGGGCAACCAA
AAAGGGGTTTCCCTTATAAGACCTGGCTGGTTTGGAAATTCCTTTTTTAA
CCACGTTGGGCTCCTATCCCAAAA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTTTAATTCTGTACCCCATGTTTAATAG
GTTTATTTGGGTTTTTGAAAGTTAAATTCTTGAGTTCTTTATGTATTCTG
GATATTAGCCCTCTATCAGATGTAGGGTTAATGAAGATTTTTTATCTCTG
ATCATTCGAAGACTTTTATGAAGGAGCGTTGGGTTTTTTCAAAGGATTTT
TCAGCATCTACCAATATGATCATGTGTTTTTTTTCCTTTCAGTTTATTTT
TATGCGGGATTATACTCGTTTTTTTTCTTATCTATTGTACCTCCCCTGCT
TCCCTCGTTTTTTTTGTTTTTATCTGCGCTGTTTGTTGTTTTGTCTCCTC
TTTGTTATTTTCCTCCTTTTTTTTTCCCCCCCCCCTGTTTTTTTTTCCTT
CCTTTTTTTATTCCTCTTCCTTTTTATTTTTCACTTTTTCTCTCTTATTT
TTCCCTTTTATCCCCTCTTTTTTTTTCTTCTCTCCCCTTCCCTCCCTCCT
TTTTCTTCTTCTTTTTATCTTTTATTTTTTTCTTTTTTTTTTATCCTTTT
TTTTCCTCCCACCCCTTTTTTCTTCCCCCCTCCTTTTTTTTCCCCCTCCC
CTTCTTTATTCTTCTCCCTCCCATTTTTGTCCCTCCTATCTGTTTGTTTG
TTTTTTCATCCCCACGTTTTTTTTTATTTGTTACTGCTTTACCACTTTTA
TATTCTGAATTATATCCCGTCATTCTTCCTCCCTCTACCTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_a24.b1 MSMg01no435_a24.b1 CHROMAT_FILE:
MSMg01no435_a24.b1 PHD_FILE: MSMg01no435_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:39 2005
         (570 letters)



>mm_chr19_13440919_13441889
          Length = 971

 Score = 1006 bits (520), Expect = 0.0
 Identities = 557/573 (97%), Gaps = 10/573 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtttca---tttatcaattattaaatgacagtgacttctttgcacattttac 60
           |||||| |||||||   |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattgagtttcaaaat--atcaattattaaatgacagtgacttctttgcacattttac 261

                                                                       
Query: 61  tgaaatatgtactatactgacacctctttttgattagtatttctctttgaccatgtcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgaaatatgtactatactgacacctctttttgattagtatttctctttgaccatgtcttt 321

                                                                       
Query: 121 ttattttattttcagaaggataatttgtcagagtagccagaaatgtaataattttaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttattttattttcagaaggataatttgtcagagtagccagaaatgtaataattttaaaag 381

                                                                       
Query: 181 ttaatgttttcatctgttactaaattttctagactatttatatcaaatagaatggtaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttaatgttttcatctgttactaaattttctagactatttatatcaaatagaatggtaatg 441

                                                                       
Query: 241 tactttcatttctgaaagagccatttctttcctgcattagataagtttgcattctctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tactttcatttctgaaagagccatttctttcctgcattagataagtttgcattctctttt 501

                                                                       
Query: 301 accatgttaccagtcatatcattgcttgttcttatggttacaattataatcttgcttcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 accatgttaccagtcatatcattgcttgttcttatggttacaattataatcttgcttcag 561

                                                                       
Query: 361 caccattgcacgtccctttgagaaaggctcttattactttcaggcccttggtcaaatgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caccattgcacgtccctttgagaaaggctcttattactttcaggcccttggtcaaatgtt 621

                                                                       
Query: 421 ccttctatcatcttcatgaaagaactatgtgcaactgactgcataaactatcttctgact 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 622 ccttctatcatcttcatgaaagaattatgtgcaactgactgcataaactatcttctgact 681

                                                                       
Query: 481 tcatttaggtagnttttttc-tttttctttttctttttctttttctttttctttttctgg 539
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||  
Sbjct: 682 tcatttaggtagtttttttcctttttctttttctttttctttttctttttctttttcttt 741

                                            
Query: 540 ttctttttct--ttttctttttctttttctctt 570
           ||||||||||  |||||||| |||||  |||||
Sbjct: 742 ttctttttctctttttctttctcttt--ctctt 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)