Query= MSMg01no435_b06.b1 MSMg01no435_b06.b1 CHROMAT_FILE:
MSMg01no435_b06.b1 PHD_FILE: MSMg01no435_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:41 2005
(506 letters)
>mm_chr19_14146945_14147850
Length = 906
Score = 812 bits (420), Expect = 0.0
Identities = 469/486 (96%), Gaps = 6/486 (1%)
Strand = Plus / Plus
Query: 26 ttgaagctggattaccttcacaattagtaatgaaggcatgcatgttagtgctcaccttaa 85
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 226 ttgaagctggattaccttcacaattagtaatgaaggcatgcatgttagtgctcagcttaa 285
Query: 86 tttctcctcctagaaagcatgagttccaatcacaacacaaaatcacacacaaacactatc 145
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 286 tttctcctcctagacagcatgagtcccaatcacaacacaaaatcacacacaaacactatc 345
Query: 146 atcctatatccacatactattttcaacatatac-agg-atattttttgtatttgaggttg 203
||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||||
Sbjct: 346 atcctatatccacatactattttcaacatatacaaggtat-ttttttgtctttgaggttg 404
Query: 204 ctttgaacctatttgttatttacagtaaatgattaccacaatacatacattattctgtgt 263
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 405 ctttgaacctatttgttgtttacagtaaatgattaccatgatacacacattattctgtgt 464
Query: 264 ggagatcatagaaaagtacatagctaagattaaagctaaaatttagcttatgttataaaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggagatcatagaaaagtacatagctaagattaaagctaaaatttagcttatgttataaaa 524
Query: 324 gataattacatgggaaaagccagattttagtaaggttgattacatt-ttttcttaaaggc 382
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 525 gataattacatgggaaaatccagattttagtaaggttgattacattattttcttaaaggc 584
Query: 383 aagttaaacttaaacagccttagtacatagtaagatagcagactgagtacataattttca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aagttaaacttaaacagccttagtacatagtaagatagcagactgagtacataattttca 644
Query: 443 ataatctca--agatgtattattaacttgattgtaaagcctggaaagatttcaatctctt 500
||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ataatctaataagatgttttattaacttgattgtaaagcctggaaagatttcaatctctt 704
Query: 501 tgaaag 506
||||||
Sbjct: 705 tgaaag 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_b06.g1 MSMg01no435_b06.g1 CHROMAT_FILE:
MSMg01no435_b06.g1 PHD_FILE: MSMg01no435_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:41 2005
(356 letters)
>mm_chr19_14250791_14251546
Length = 756
Score = 673 bits (348), Expect = 0.0
Identities = 354/356 (99%)
Strand = Plus / Minus
Query: 1 aagcggactgtgtttgaccccagtgccctgaagaccagacaatggagcaggtagaggaaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 556 aagcggactgtgtttgaccccagtgccctgaagaccagacaatggaacaggtagaggaaa 497
Query: 61 tgaaattcgtgttcatggcctgtgtccttccttatgaaggacagggagaatgaaagaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgaaattcgtgttcatggcctgtgtccttccttatgaaggacagggagaatgaaagaaga 437
Query: 121 aggtcagtaggaaaatggaaaggagagcaaggctagtcagagcagagcaaacgagtggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 436 aggtcagtaggaaaatggaaaggagagcaaggctagtcagagcagagcaaatgagtggcg 377
Query: 181 gagagcagttgtccatcttactgacactcattcctgttctgcagagacttaaaatgccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagagcagttgtccatcttactgacactcattcctgttctgcagagacttaaaatgccat 317
Query: 241 aacactattgttttaaggagatggagataaactgtgctttaaaaatgtattttcacatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aacactattgttttaaggagatggagataaactgtgctttaaaaatgtattttcacatat 257
Query: 301 atttaagacatatttctcagtatgtatttggaatatacattatactaattgtgtat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atttaagacatatttctcagtatgtatttggaatatacattatactaattgtgtat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
