Query= MSMg01no435_b11.b1 MSMg01no435_b11.b1 CHROMAT_FILE:
MSMg01no435_b11.b1 PHD_FILE: MSMg01no435_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:42 2005
(314 letters)
>mm_chr19_42650082_42650795
Length = 714
Score = 607 bits (314), Expect = e-178
Identities = 314/314 (100%)
Strand = Plus / Minus
Query: 1 tcaatatcaggaagttcatggctgtaataatcaaatctaggctcctggatgctttttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcaatatcaggaagttcatggctgtaataatcaaatctaggctcctggatgctttttctg 455
Query: 61 ttcttcacattcccagataactagggaggaaaaaacatagtaaaatgcctgctaatggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttcttcacattcccagataactagggaggaaaaaacatagtaaaatgcctgctaatggag 395
Query: 121 aatcaagacatcataaaaataccctttcatgtataaacaatcctgctctgtctccaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aatcaagacatcataaaaataccctttcatgtataaacaatcctgctctgtctccaggtt 335
Query: 181 ccaattccttaactttccgcattatgtctgtactcgtggtgttttttaatataatactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccaattccttaactttccgcattatgtctgtactcgtggtgttttttaatataatactgg 275
Query: 241 tcagatctactgatttataatcatacatgtggaatgttggaaaaggtgttaaaatctcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tcagatctactgatttataatcatacatgtggaatgttggaaaaggtgttaaaatctcat 215
Query: 301 taaataagcaaggc 314
||||||||||||||
Sbjct: 214 taaataagcaaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_b11.g1 MSMg01no435_b11.g1 CHROMAT_FILE:
MSMg01no435_b11.g1 PHD_FILE: MSMg01no435_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:42 2005
(278 letters)
>mm_chr19_42501575_42502254
Length = 680
Score = 491 bits (254), Expect = e-143
Identities = 273/280 (97%), Gaps = 2/280 (0%)
Strand = Plus / Plus
Query: 1 agtaatctctccagtcactactgcctaggggctgcagtgggattggaaacataaggagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaatctctccagtcactactgcctaggggctgcagtgggattggaaacataaggagca 260
Query: 61 tgggggggg--gaacaaaggtcttctcatccatcctttactctttttctctagcccttca 118
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggggggacggacaaaggtcttctcatccatcctttactctttttctctagcccttca 320
Query: 119 caccttcttgtacatgtttcaaacccaatctcacagtcctctgctacttcttatttctta 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 caccttcttgtacatgtttcaaacccaatctcacagtcttctgctacttcttatttctta 380
Query: 179 aacgccctaagtggtccagcgtgtgtttggtgtgataatgaaccaattgatttcatactt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacgccctaagtggtccagcgtgtgtttggtgtgataatgaaccaattgatttcatactt 440
Query: 239 tcttttatggagagttcacaggtttatgtcccctaagcaa 278
||| || ||||||||||||||||||||||||||||||||
Sbjct: 441 tctcctaaggagagttcacaggtttatgtcccctaagcaa 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 680
Length adjustment: 9
Effective length of query: 269
Effective length of database: 671
Effective search space: 180499
Effective search space used: 180499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
