Query= MSMg01no435_m23.b1 MSMg01no435_m23.b1 CHROMAT_FILE:
MSMg01no435_m23.b1 PHD_FILE: MSMg01no435_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:41 2005
(249 letters)
>mm_chr19_34819077_34819725
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Minus
Query: 1 atttcagttttacgttaagcagggaaacaaatgtgaatgttctgtcttcagatccggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atttcagttttacgttaagcagggaaacaaatgtgaatgttctgtcttcagatccggtca 390
Query: 61 acttgctgaacttataatcatgggaaacgaacaactctcacagttgctttgatgttcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acttgctgaacttataatcatgggaaacgaacaactctcacagttgctttgatgttcatg 330
Query: 121 aactgacttgggctacaccgtcatgtgccttattggtaaacctatcaccatggtaatttt 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 329 aactgacttgggctacaccgtcatgtgccttattggtaaacctgtcaccatggtaatttt 270
Query: 181 tctctttgaattacagacattccagatttaacattctctcagctgcattttcttcaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tctctttgaattacagacattccagatttaacattctctcagctgcattttcttcaaaaa 210
Query: 241 gcacagttt 249
|||||||||
Sbjct: 209 gcacagttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no435_m23.g1 MSMg01no435_m23.g1 CHROMAT_FILE:
MSMg01no435_m23.g1 PHD_FILE: MSMg01no435_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:42 2005
(363 letters)
>mm_chr19_34625690_34626452
Length = 763
Score = 557 bits (288), Expect = e-163
Identities = 353/386 (91%), Gaps = 23/386 (5%)
Strand = Plus / Plus
Query: 1 ctctctgtggaggtagagtggacacaatgaatttctttcttcccccc--tccccctccct 58
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 178 ctctctgtggagatagagtggacacaatgaatttctttcttcccccccctccccctccct 237
Query: 59 cgccctctccctgccccc-ttctctctttctctctctctctctctctctctctctctctc 117
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 238 cgccctctccctgccccccttctctctctctctctctctctctctctctctctctctctc 297
Query: 118 tct-ctctctctctctctctctctc---------------cttccttccttccttccttc 161
||| || ||| ||| ||| ||| || ||||||||||||||||||||
Sbjct: 298 tcttctttctttctttctttctttctttctttctttctttcttccttccttccttccttc 357
Query: 162 cttccttccttccttccttc---ctt-ctttctttctttctttctttctttctttctttc 217
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 358 cttccttccttccttccttctttctttctttctttctttctttctttctttctttctttc 417
Query: 218 tttcttctttctaaaatattttctggatttaaatgttggtaaaggaagaagagaggaaaa 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 418 tttcttctttctaaaatattttctggatttaaatgttggtaaaggaagaagagaggtaaa 477
Query: 278 agttagaagtagggactgggaatctcaaattagggtgcagttcagagatgaggaaggcac 337
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 478 cgttagaagtagggactgggaatctcaaattagggtgcagttcagagatgaagaaggcac 537
Query: 338 aatgaggtatttgtgtcctcatgagg 363
||||||||||||||||||||||||||
Sbjct: 538 aatgaggtatttgtgtcctcatgagg 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
