Query= MSMg01no436_a17.b1 MSMg01no436_a17.b1 CHROMAT_FILE:
MSMg01no436_a17.b1 PHD_FILE: MSMg01no436_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:00 2005
(473 letters)
>mm_chr19_55350896_55351767
Length = 872
Score = 884 bits (457), Expect = 0.0
Identities = 466/469 (99%), Gaps = 1/469 (0%)
Strand = Plus / Plus
Query: 5 gaattctcttactgcccagtgtaagacacaaattggagaaatattgaaggcaaacatgtt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttactgtccagtgtaagacacaaattggagaaatattgaaggcaaacatgtt 264
Query: 65 cttatctaagactccacatcttagaaggcatgctcatagaaacaattatgtgtactcatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttatctaagactccacatcttagaaggcatgctcatagaaacaattatgtgtactcatg 324
Query: 125 agattagataaaaatataaaaatatgggaaagatctattttcattagttgttaaaacaga 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agattagataaaaatataaaa-tatgggaaagatctattttcattagttgttaaaacaga 383
Query: 185 tgaaagtaataacttctcaagtctatgaagccagaaattaattttaaacaacacaatttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaaagtaataacttctcaagtctatgaagccagaaattaattttaaacaacacaatttt 443
Query: 245 catctctgcaaatgtgttaaaactcaattggttgaacaaaagtaaatgtttacaacagtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catctctgcaaatgtgttaaaactcaattggttgaacaaaagtaaatgtttacaacagtt 503
Query: 305 tggtcaactcaaactctgagctgagtgctaaagtcccagccccttctaccctgggttgtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggtcaactcaaactctgagctgagtgctaaagtcccagccccttctaccctgggttgtt 563
Query: 365 ttctatccctatgacaaaagtcatggccaaaaataactggggaaggtagtgggtggattg 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttctatcgctatgacaaaagtcatggccaaaaataactggggaaggtagtgggtggattg 623
Query: 425 gcttaacacttcccgttcctagttggttactaaggcaaggcagggatgg 473
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcttaacacttcccgttcctagttggttactaaggcaaggcagggatgg 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_a17.g1 MSMg01no436_a17.g1 CHROMAT_FILE:
MSMg01no436_a17.g1 PHD_FILE: MSMg01no436_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:01 2005
(546 letters)
>mm_chr19_55520402_55521347
Length = 946
Score = 978 bits (506), Expect = 0.0
Identities = 536/546 (98%)
Strand = Plus / Minus
Query: 1 tgtatctgtgtgaggcattagctgtaacttctgtcttcctgggcttagcatttccttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgtatctgtgtgaggcattagctgtaacttctgtcttcctgggcttagcatttccttttt 549
Query: 61 cttcctgcaaatatttcacttaaatgccaaggcttaggcctctaaaaaaaatgtcaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cttcctgcaaatatttcacttaaatgccaaggcttaggcctctaaaaaaaatgtcaggaa 489
Query: 121 taaactagtgctagtttgtgataataaggctaaacctcgctgtcctttcacacgtgagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 taaactagtgctagtttgtgataataaggctaaacctcgctgtcctttcacacgtgagat 429
Query: 181 tccagagcgaagtgacttgtttatgggtgtaatgacgtcactgaaagcttgctggagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tccagagcgaagtgacttgtttatgggtgtaatgacgtcactgaaagcttgctggagaga 369
Query: 241 tttgttgtgactgctctcccagatatcactgaatcttcagaaggaatctggaaaagctga 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 368 tttggggtgactgctctcccagatatcactgaatcttcagaaggaatctggaaaagttga 309
Query: 301 tgtagcaatatggcttcaggtctctccagttgaggggagatgctgcagaagggaggatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgtagcaatatggcttcaggtctctccagttgaggggagatgctgcagaagggaggatac 249
Query: 361 acaccaggtaaacacctaagatagctttaggataatacaggagaaagattctgcctgcct 420
|||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 248 acaccaggtaaatacctaagatagctttaggataatacaggagtaagactctgcctgcct 189
Query: 421 gccggcctgcctgctgcttctctattaatcagcttcctattggagcacaggatggccttg 480
||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct: 188 gccggcctgcctgctgcttgtgtattaatcagcttcctaatggagcacaggatggccttg 129
Query: 481 aactagtgatcttcccgttataacctcatgaatactggaaatacagatgagattcaccac 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aactagtgatcttcctgttataacctcatgaatactggaaatacagatgagattcaccac 69
Query: 541 acccca 546
||||||
Sbjct: 68 acccca 63
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
