BAC Information

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BAC

Clone NameMSMg01-436G17
Chromosome19 (Build37)
Map Location 39,050,886 - 39,051,309
singlet/doubletsinglet
Overlap geneLOC209753
Upstream geneFer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells
Downstream geneCyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436G17.T7 (MSMg01no436_g17.b1)MSMg01-436G17.TJ (MSMg01no436_g17.g1)
ACCAG527491AG527492
length741763
length of high quality
(start - end)
426 (202 - 627)149 (325 - 473)
definitionCHROMAT_FILE: MSMg01no436_g17.b1 PHD_FILE: MSMg01no436_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:29 2005CHROMAT_FILE: MSMg01no436_g17.g1 PHD_FILE: MSMg01no436_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCTCATAATTGGCGGCGCTATACGACTCCTATATTCAGAAATCCGCGGAA
TTCACTATTTCTCCTATGGCACTCTCTATATAAGAAGCTGTGGGAATATT
TGCTTTACAAGGAAACAGATAGTATCAAAGATTAATTTTCTTTTGTAACA
GTGGAGAAGCTCTTAAAAAAACACTTACTTTTTCCTACAGATTGGCCGGT
GTTCTTCACATCTATCTGGAGGATGTTTCCAATAATTGGGAGAGGGGTGG
GGCCAGGAGGGAGCTTCCCTCTCCCAGAGTTTTGTCTCCATCGTGAGAGG
AGAAGCAGACAGGACAGAGTGAGCACCAGGACCAGGACTGGATCCATGGC
AGCTTTCTCTTCTCAGGGAGACTCCTGTGAGCTTGCAGCCCAGGGCTTTT
ATAATGCTAGCTGCCAACTCAACAAGTGCTTCTGAGACCTAAGTGACCAA
TCAGCTAGATGTGCTTTCATCTTTCTTCTTTGTGGACTTTGGCCTGTTGA
AATGCACAAAAGGAAGCAGTTCTTCACTCTTACTCTCCACAGCTCCACTC
TGAAATCCTGTTGTAACTAGTCTGGGGCGGGACCCAGTGTGAGCTTGTTA
GCATTCCTCCTTGGCTCTGCCCAGCTCTTACGTAGCATCATCCAGATAGG
AGCTTCTCTGGTCCTTTTCTTCCTGAGTCCTCTCTCATCCTCTCTCCCCC
TCTTCCCTCCCTCTCCATGTATTCCCAGTCTGCCTCCTCCN
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGACCTCTGGAAGACAGTCAGTGCTC
TTACTCGCTGAGCCATCTCACCAGCCCAGGTTTGTTTATTAAATGTATGT
ACATATGTGTATATGCCTCATGTCTGTTGGTGCCCCTGGGGTCCAGAAGA
GGGAGTCAGATTTCCCTGGAGATGGAGTTACAGCTGATTTTGAGTCACCA
GACATGAGTACTGAGAAATGAATTCTGCCCCTATGGAAGAGCAACAAGCA
CTCTTACCCCTAAGCCATCTTTTAGTCTCATGTCTCAAAAAAATCTTAAA
GTAAAAAGAGTATTGGATATATAACTTAGTGGAACAGTCCTTGCCTAGCA
CATGTAAGATGTAAGGCCCTAGGCTTAGTACTCAATATCACACATATATA
CATACACACACACACACACACACCACTGAAAGAAAGAAAGAAAAAAAGAT
AGAAAGAAAGAAAGAAAGAAAGGAGGAAGGTAGGGAGGGAGGGAGGTAGT
CCTTCTTTTTCTCCTTTTTTTTCTCTCTATTCTTTTCTCCTTTTTCTTTA
GCTCTCCTTACTTTTTTTTTCTTTTTTTTTCTCTCCTTTTCTTTCCTTTA
TTATTTTTTTTTTTTCTTTACTTGTTTCTTTATTCTCCTCTTTCTCTTCT
TTTTTCTATTCTTTCTTTTTTTTTCTTTATCCCTTCTTTTTTTTCTATCT
CCTCCCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_g17.b1 MSMg01no436_g17.b1 CHROMAT_FILE:
MSMg01no436_g17.b1 PHD_FILE: MSMg01no436_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:29 2005
         (426 letters)



>mm_chr19_39050686_39051510
          Length = 825

 Score =  799 bits (413), Expect = 0.0
 Identities = 422/425 (99%), Gaps = 1/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttcacatctatctggaggatgtttccaataattgggagaggggtggggccaggaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcttcacatctatctggaggatgtttccaataattgggagaggggtggggccaggaggg 565

                                                                       
Query: 61  agcttccctctcccagagttttgtctccatcgtgagaggagaagcagacaggacagagtg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 agcttccctctcccagagttttgtctccatcatgagaggagaagcagacaggacagagtg 505

                                                                       
Query: 121 agcaccaggaccaggactggatccatggcagctttctcttctcagggagactcctgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agcaccaggaccaggactggatccatggcagctttctcttctcagggagactcctgtgag 445

                                                                       
Query: 181 cttgcagcccagggcttttataatgctagctgccaactcaacaagtgcttctgagaccta 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttgcagcccagggc-tttataatgctagctgccaactcaacaagtgcttctgagaccta 386

                                                                       
Query: 241 agtgaccaatcagctagatgtgctttcatctttcttctttgtggactttggcctgttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtgaccaatcagctagatgtgctttcatctttcttctttgtggactttggcctgttgaa 326

                                                                       
Query: 301 atgcacaaaaggaagcagttcttcactcttactctccacagctccactctgaaatcctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcacaaaaggaagcagttcttcactcttactctccacagctccactctgaaatcctgt 266

                                                                       
Query: 361 tgtaactagtctggggcgggacccagtgtgagcttgttagcattcctccttggctctgcc 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtaactagtctggggtgggacccagtgtgagcttgttagcattcctccttggctctgcc 206

                
Query: 421 cagct 425
           |||||
Sbjct: 205 cagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 825
Length adjustment: 9
Effective length of query: 417
Effective length of database: 816
Effective search space:   340272
Effective search space used:   340272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)