GCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATATTATCTGACTTGACCACAAGCTCTATATTGGCACAGCTC
TCTTTCCTGCCCCTCCACTGTTTTGCTGTGGGGCAGGCTCTCATGTATCC
CAGGCTGACCTTGAACTTGAAACGCAGCTAGGATCGTCTTGAACTTCTGA
TCCTCTTGCCTGCACTTCCCATGCACTGGAATTATAGGTATCTACCATCA
TGCACCATTTATGGAAATTCTTAAAAGAATTTTATTATTTTCAAATTCTT
TTTTATGTTCTAATGTTGCCAAAGGCTTGGTTTTTTTTTAAAGTTTAAAC
TACAGAAAAATAAAGAAATGTCTTTCTTCTCTATACCTACCCCATGTAGA
CATTCATAATTGATGGTATATTTTGTTCTACACACACATACACACTTTAA
AAAATGGGTGTAATGAATTTTATGTAAATGGTAGCACCCAAAGCCTGCAT
CTTTGTTAACTTGGACTCTTAAGTATGCATATCTTAAATATTATTACATA
CCAATATACTTAGAATTTTTCCATAGTGAATGTCATATTATAGTTGACCA
CTTTCTTATTGATGGTCATTTAGATTAGCTTTTATTTTTAAAAAGTAATT
ATTTCATTTCCAAATGTGTGTGCGTGCGAGTGTGTGTGCGTGTGCGTGCT
GCCCTTCATTCCCTTTTTCCCCTTCCCTCTTTTATTCTCTATTTTTCTTC
ATCTTTT

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGATCGTCATCCTGACCTC
AGGTCTCTTACTGTGCTAGCGATTAATGGGTAAGATGAGGGGCCCAGGGT
GCCAGTTCCTCGATTTTATAGGCTAAGAGGAGCCTCGGAGTGAGCCCTGG
GTGACAGAGCACTAGTGTACAACACTGCAGCCTGCTTCTCCGCAGGTGGT
TGAATGTTGTACTAAACGGACGCTATGTGATGTCGAGTAGTGATGTGTTG
TGCTTTGATACACAACTCAATGACCCCACTACCTATTCGAATGGTTCCTC
CATCGTCCCAACAATGTGTCTTTATTCATGGTTTTTTTCTATCACCGGAA
CTCTACCCTAATTTTTAAATACTCTCTTATCGTAGTTGATTTATCCCTAT
CTCTCTTTGCTTGGGTACGGATGATAATGTATCTACTATGTTCGGTGTTG
TTTCGTCCCTTTATTATACCTCCCCCTGTAATTTGCTCCCTCTTATATTT
GTTGTTATCTTACCCCCATCGCTCCTTTCCCTTATTCTTTCTCCTTTTCT
TTCACTCCACACTTGACACCTACCTCCTCCTTATACCCTTCTTTTTACTG
TTTTATCTACATGTCTCCCTTCTCTTTCTTCTTTTCCTTCCTCCTCTCTT
CTTGTCCTGTAACTACATCCACCGGCCTACTATGTTCACCCTCCCTCCCA
CACACTCTCTTACCTCCTCTCTCTCACATTTACATCTATTATCTCTTTTT
TATCTTTCTTCCCCTCTCTTTCTTTTCTCCTCCCATCCATCCTCTCCCAC
CTTCTCAATATAGTTCCTTATCACACCCTACCTTGTCTATCTCATCTACT
ACTTCTTCTCTCTCCTTTCTCCTCTCTTCCCTACTTCCTCCGTTTTACTC
AACTTATACGCTACTATCATTCCACCAATTCTTCTACGTTGCTATCTTCT
CCTTGGATCTAT

Query= MSMg01no436_k21.b1 MSMg01no436_k21.b1 CHROMAT_FILE:
MSMg01no436_k21.b1 PHD_FILE: MSMg01no436_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:49 2005
         (595 letters)



>mm_chr19_17228777_17229769
          Length = 993

 Score =  990 bits (512), Expect = 0.0
 Identities = 572/598 (95%), Gaps = 13/598 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaagctctatattggcacagctctctttcctgcccctccactgttttgctgtggggcag 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 201 acaagctctatattggcacagctctctttcctgaccctccactgttttgctgtgggacag 260

                                                                       
Query: 61  gctctcatgtatcccaggctgaccttgaacttgaaacgcagctaggatcgtcttgaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctcatgtatcccaggctgaccttgaacttgaaacgcagctaggatcgtcttgaactt 320

                                                                       
Query: 121 ctgatcctcttgcctgcacttcccatgcactggaattataggtatctaccatcatgcacc 180
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ctgatcctcttgcctgcactttccatgcactggaattataggtatctaccatcacgcacc 380

                                                                       
Query: 181 atttatggaaattcttaaaagaattttattattttcaaattcttttttatgttctaatgt 240
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 atttatggaaattcttaaa-gaattttattattttcaaattcttttttatgttctaatat 439

                                                                       
Query: 241 tgccaaaggcttggtttttttttaaagtttaaactacagaaaaataaagaaatgtctttc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgccaaaggcttg-tttttttttaaagtttaaactacagaaaaataaagaaatgtctttc 498

                                                                       
Query: 301 ttctctatacctaccccatgtagacattcataattgatggtatattttgttctacacaca 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 499 ttctctatacctaccccatgtagacattcataattgagggtatattttgttctacacaca 558

                                                                       
Query: 361 catacacactttaaaaaatgggtgtaatgaattttatgtaaatggtagcacccaaagcct 420
           |        |||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct: 559 c--------tttaaaaaatgggtgtaatgaattttatgtaaatagtagcactcaaagcat 610

                                                                       
Query: 421 gcatctttgttaacttggactcttaagtatgcatatcttaaatattattacataccaata 480
           ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 611 gcagctttgttaacttggactcttaagtatacatatcttaaatattattacataccaata 670

                                                                       
Query: 481 tacttagaatttttccatagtgaatgtcatattatagttgaccactttcttattgatggt 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 671 tacttagaatttttccatagtgaatgccatattatagttgaccactttcttattgatggc 730

                                                                     
Query: 541 catttagattagcttttattttt---aaaaagtaattatttcatttccaaatgtgtgt 595
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 731 catttagattagcttttattttttaaaaaaagtaattatttcatttccaaatgtgtgt 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 993
Length adjustment: 10
Effective length of query: 585
Effective length of database: 983
Effective search space:   575055
Effective search space used:   575055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)