Query= MSMg01no437_f24.b1 MSMg01no437_f24.b1 CHROMAT_FILE:
MSMg01no437_f24.b1 PHD_FILE: MSMg01no437_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:45 2005
(493 letters)
>mm_chr19_31045312_31046202
Length = 891
Score = 851 bits (440), Expect = 0.0
Identities = 474/486 (97%), Gaps = 2/486 (0%)
Strand = Plus / Plus
Query: 5 gaattcacctgcaaatatctctgatttcgcttactgacttccctatatcaccagctgcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctgcaaatatctctgatttcgcttactgacttccctatatcaccagctgcag 264
Query: 65 agcagtcacaaatgaaggtcactcctgaagacttaattcttgagattccagggatgggat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcagtcacaaatgaaggtcactcctgaagacttaattcttgagattccagggatgggat 324
Query: 125 ggtttagagatttgctgttgcttctgttccctccatactccaatccttgtatgttcttgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 ggtttagagatttgctgttgcttctgttccctccatactccaatccttgtatgtttttgc 384
Query: 185 tagactaggaatccacacccactcaaagaccttcaatatctctaccaaccaccaaaatca 244
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagactatgaatccacactcactcaaagaccttcaatatctctaccaaccaccaaaatca 444
Query: 245 gtacagattattgtctctggcatttccaaagaaagtatatgagcaggaaatttagaagcc 304
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 gtgcagattattgtctctggcatttccaaagaaagtatatgagcaggaaattcagaagcc 504
Query: 305 tttagataaggcatcacacagtatggaaggcatgggaactggtgtgagaagaaacaatta 364
||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct: 505 tttagataaggcatcacacagcatggcaggcatgggaactggtgtga--agaaacaatta 562
Query: 365 acttgctaagatcaacaattgacttaagtcaggtgtggtgcagggctttaagccccactt 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 563 acttgctaagatcaacaattgacttaagtcaggtgtggtgcatggctttaagccccactt 622
Query: 425 gtggggagtaaaggcaagaagaggctcaggagttgagtgtcttttttacctacccagcta 484
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtggggagtaaagacaagaagaggctcaggagttgagtgtcttttttacctacccagcta 682
Query: 485 ctacaa 490
||||||
Sbjct: 683 ctacaa 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 891
Length adjustment: 10
Effective length of query: 483
Effective length of database: 881
Effective search space: 425523
Effective search space used: 425523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_f24.g1 MSMg01no437_f24.g1 CHROMAT_FILE:
MSMg01no437_f24.g1 PHD_FILE: MSMg01no437_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:45 2005
(253 letters)
>mm_chr19_31201596_31202248
Length = 653
Score = 412 bits (213), Expect = e-119
Identities = 248/271 (91%), Gaps = 18/271 (6%)
Strand = Plus / Minus
Query: 1 caggctagctggggctgcatggtaagactctgcctttaaaaaaaaaa------------- 47
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 caggctagctggggctgcatggtaagactctgccttaaaaaaaaaaaaaaaaaaaaaaaa 562
Query: 48 -----aaaagaaaagaaaaggaaaaagaaaaaagaaggaagaaatgggggtaaaagaaag 102
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaagaaaagaaaagaaaaggaaaaagaaaaaagaaggaagaaatgggggtaaaagaaag 502
Query: 103 gaaggaagaagtgaggggttaagagagaaagagggagagagagagagaaactgccctctg 162
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 gaaggaagaagtgaggggataagagagaaagagggagagagagagagaaactgccatctg 442
Query: 163 aaatgtaaacttaaaatagttataatgaaactgaatcattcaaaatgttctctgagttac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgtaaacttaaaatagttataatgaaactgaatcattcaaaatgttctctgagttac 382
Query: 223 tgtgtttctacctgagtgtatttaacctcca 253
|| ||||||||||||| ||||||||||||||
Sbjct: 381 tgagtttctacctgagcgtatttaacctcca 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space: 157136
Effective search space used: 157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
