Query= MSMg01no437_g01.b1 MSMg01no437_g01.b1 CHROMAT_FILE:
MSMg01no437_g01.b1 PHD_FILE: MSMg01no437_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:45 2005
(322 letters)
>mm_chr19_55907605_55908326
Length = 722
Score = 559 bits (289), Expect = e-164
Identities = 295/297 (99%)
Strand = Plus / Minus
Query: 25 ttatttaaaaacaaacaaaaccttagttgtataacccatgaaatatgatactaacattca 84
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttatttaaaaacaaacaaaacctcagttgtataacccatgaaatatgatactaacattca 462
Query: 85 ttatgagatgccacaggttcagcgcacacacacgggcaactgtataggcacctacactga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttatgagatgccacaggttcagcgcacacacacgggcaactgtataggcacctacactga 402
Query: 145 actacacagacactgaagcctaacagtgattccttagggatgaagacctgtgcacttggg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 actacacagacactgaagcctaacagtgattccttagggatgaagacctgtgcacttggg 342
Query: 205 aaaacaacagaagtcagcctggttttgttcattatttttaatggtgtgtaagtagtatgt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaaacaacagaagtcagcctggttttgttcattatttttaatggtgtgtaagtagtatgt 282
Query: 265 gtgcatatgcgaacatttatgtgagtgcaggttttaattatgtgtctaggtgtgttg 321
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 281 gtgcatatgcgaacatttatgtgagtacaggttttaattatgtgtctaggtgtgttg 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_g01.g1 MSMg01no437_g01.g1 CHROMAT_FILE:
MSMg01no437_g01.g1 PHD_FILE: MSMg01no437_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:45 2005
(413 letters)
>mm_chr19_55728494_55729301
Length = 808
Score = 632 bits (327), Expect = 0.0
Identities = 384/413 (92%), Gaps = 17/413 (4%)
Strand = Plus / Plus
Query: 1 ttccacttgtgttttccatgcagagctgacagctagcagtgacttaggcagatttattca 60
||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 201 ttccacttgcgttttccatgcagagctgacagctggcagtgacttaagcagatttattca 260
Query: 61 ggaaccaaggcaccggcaggaaacagacccagaccccagcgacttccctttggaacatca 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaccaaggca-----aggaaacagacccagaccccagcgacttccctttggaacatca 315
Query: 121 ccatctcatgggtctctcaagagtccaaggtaagaaatcagtgaggaggaaaggtaggac 180
| |||||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct: 316 ctatctcatgggtctctcaagagtcccaggtaagaagtcagtgagga------------c 363
Query: 181 agggcacaggctctgaagaaacaaatatggagacgagaatgtgcacaaatgaccttgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agggcacaggctctgaagaaacaaatatggagacgagaatgtgcacaaatgaccttgatc 423
Query: 241 agaccctgattagaagagagatcttgaggaagaccttcaatgtatggggatctcatgaga 300
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agaccctgaagagaagggagatcttgaggaagaccttcaatgtatggggatctcatgaga 483
Query: 301 aataaatgaaaaccagatacagtcatctttggtgccagagactggagaccattgtagttc 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 484 aataaatgaaaaccagatacagtcatctttggtgccagagactagagaccattgtagttc 543
Query: 361 aaaaacattacacattttccatggataatgtcacacaagctactacttccctt 413
||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 544 aaagacattacacattttccgtggataatgtcacacaagctactacttccctt 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 808
Length adjustment: 9
Effective length of query: 404
Effective length of database: 799
Effective search space: 322796
Effective search space used: 322796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
