Query= MSMg01no437_h11.b1 MSMg01no437_h11.b1 CHROMAT_FILE:
MSMg01no437_h11.b1 PHD_FILE: MSMg01no437_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:52 2005
(225 letters)
>mm_chr19_48227977_48228601
Length = 625
Score = 313 bits (162), Expect = 4e-90
Identities = 189/198 (95%), Gaps = 2/198 (1%)
Strand = Plus / Plus
Query: 4 ggaattctccagtctccaccacgtgaatactggggctaagcacttgctgctacatcaagc 63
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattctccagtctccaccacgtgagtgctggggctaagcacttgctgctacatcaaac 263
Query: 64 tttacagagttct-gagggatctgaactctggttctcttgtttgcttggcaagtgcctta 122
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttacagagttcttg-gggatctgaactctggttctcttgtttgcttggcaagtgcctta 322
Query: 123 cccatgagaaatctctcattttttaaatgagtcacccttcccattctcctcccctcttgt 182
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 tccatgagaaatctctcattttttaaatgagtcacccttcccactctcctcccctcttgt 382
Query: 183 gtgtgtgtgtgtgtgtgt 200
||||||||| | ||||||
Sbjct: 383 gtgtgtgtgcgcgtgtgt 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space: 133056
Effective search space used: 133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no437_h11.g1 MSMg01no437_h11.g1 CHROMAT_FILE:
MSMg01no437_h11.g1 PHD_FILE: MSMg01no437_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:52 2005
(505 letters)
>mm_chr19_48425470_48426374
Length = 905
Score = 977 bits (505), Expect = 0.0
Identities = 505/505 (100%)
Strand = Plus / Minus
Query: 1 aaactctcaaattttcaggatcttttttctcttctatcacatggatggcctctaccatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aaactctcaaattttcaggatcttttttctcttctatcacatggatggcctctaccatct 646
Query: 61 ttcccatgaagctccccctgccctccttttttatttactccccatctctgaaaaccccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttcccatgaagctccccctgccctccttttttatttactccccatctctgaaaaccccaa 586
Query: 121 ctaagaaatggtttgctaatgtttttcctttctctgtgtctgcctgaagctaagaggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctaagaaatggtttgctaatgtttttcctttctctgtgtctgcctgaagctaagaggaag 526
Query: 181 ctggattagacatgagtatgtttatgtatgcacctggcactgtcctttctgtatggctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctggattagacatgagtatgtttatgtatgcacctggcactgtcctttctgtatggctat 466
Query: 241 caatcatctataggaccactgcctgctacactgacttatttagcactgtggtgacctgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 caatcatctataggaccactgcctgctacactgacttatttagcactgtggtgacctgga 406
Query: 301 agctatagcctgtatctctggtgcttggaataaggagggcagcagtgctgtgtggaaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agctatagcctgtatctctggtgcttggaataaggagggcagcagtgctgtgtggaaact 346
Query: 361 taaacagccgttgctctcccactctggggaagaaactgctgcctggtgactaccaggaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taaacagccgttgctctcccactctggggaagaaactgctgcctggtgactaccaggaac 286
Query: 421 aattacagagacactggtaccgaatgcctctgagactcccattctaagaagagacaggac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aattacagagacactggtaccgaatgcctctgagactcccattctaagaagagacaggac 226
Query: 481 agggaagaaattccagaattatcca 505
|||||||||||||||||||||||||
Sbjct: 225 agggaagaaattccagaattatcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
