Query= MSMg01no437_j17.b1 MSMg01no437_j17.b1 CHROMAT_FILE:
MSMg01no437_j17.b1 PHD_FILE: MSMg01no437_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:03 2005
(621 letters)
>mm_chr19_19616958_19617978
Length = 1021
Score = 1139 bits (589), Expect = 0.0
Identities = 613/621 (98%)
Strand = Plus / Minus
Query: 1 ctatttgtcttctactttctcttttcattcatataaagtatgtgatatgggtatgtacat 60
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 821 ctatttgtcttctactttctcttttcattcatataaattatgtgagatgggtatgtacat 762
Query: 61 gcataagcgttcctgtgtagaaatatctggaagctttaaatcatctgttgattaaatgtg 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gcataagtgttcctgtgtagaaatatctggaagctttaaatcatctgttgattaaatgtg 702
Query: 121 atgagtagtgtgccatttgagtgccaacctggaattgaattatgacccagacggttattt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 atgagcagtgtgccatttgagtgccaacctggaattgaattatgacccagacggttattt 642
Query: 181 gttctgtgaatttgaatgtacttttgaaaaacctctttgtttagtctgtggtttcttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gttctgtgaatttgaatgtacttttgaaaaacctctttgtttagtctgtggtttcttctt 582
Query: 241 ataaagtatgtatattaaatacaatatgtgataaatagtaatttgaagagtgcatgatac 300
|||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 581 ataaagtatgaaaattaaatacaatatgtgataaatagtaatttgaaaagtgcatgatac 522
Query: 301 acagtaaatgttcattaatgttaactggtacagttgtgttcagcggtgttgtaaaggcat 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 521 acagtaaatgttcattaatgttaactggtacagttgtgttcagtggtgttgtaaaggcat 462
Query: 361 ccataaaacagggacctggatacttgtacttttatgctgcgatgctctctgggtttttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ccataaaacagggacctggatacttgtacttttatgctgcgatgctctctgggtttttgg 402
Query: 421 aaagtgttagttatgctgtaaaagcaaggaaattcatatgttacttatttgcatatatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaagtgttagttatgctgtaaaagcaaggaaattcatatgttacttatttgcatatatgg 342
Query: 481 agcaattgaaagacaagtaaaccaacagtttgggatttaaataaccaaaaatagacttat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agcaattgaaagacaagtaaaccaacagtttgggatttaaataaccaaaaatagacttat 282
Query: 541 gttctcaaaattgacttgaaaataaactgcgaaaatgaagacacctccttctccatatct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gttctcaaaattgacttgaaaataaactgcgaaaatgaagacacctccttctccatatct 222
Query: 601 tgaaggcacaactttctttag 621
|||||||||||||||||||||
Sbjct: 221 tgaaggcacaactttctttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_j17.g1 MSMg01no437_j17.g1 CHROMAT_FILE:
MSMg01no437_j17.g1 PHD_FILE: MSMg01no437_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:03 2005
(528 letters)
>mm_chr19_19385942_19386875
Length = 934
Score = 855 bits (442), Expect = 0.0
Identities = 500/530 (94%), Gaps = 22/530 (4%)
Strand = Plus / Plus
Query: 5 catgtaaatttataatcttacattggaaaaaattaaaatcatgggctggagaagtttgat 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 catgtaaatttataatcttacattggaaaaaattaaaatcatgggctggaaaagtttgat 264
Query: 65 actttgtatcatgtacctgttagccttgctctctcatctatactatgagtatttcaaatc 124
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 actttgtatcatgtacttgttagtcttgctctctcatctatactatgagtatttcaaatc 324
Query: 125 tctgcttggtccttcagattcattctgcaattctgtagagagctacacaaagaacactaa 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tctgcttggtccttcagattcattctgcaattctgtagagagatacacaaagaacactaa 384
Query: 185 gctttgtaatcttttggaaagaaacctccaatgtttcttcgtgtcaactattcttt---a 241
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 385 gctttgtaatcttttggaaagaaaccttcaatgtttcttcgtgtcaactattctttttta 444
Query: 242 tatccttccttaagaaagaaacattcattat---atttcaaggttaatgccttctataag 298
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tatccttccttaagaaagaaacattcattatcatatttcaaggttaatgccttctataag 504
Query: 299 acaaaatcgttgactcttcaagatgtttggctttataaggaaaagttcaaggcatattgt 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaaactcgttgactcttcaagatgtttggctttataaggaaaagttcaaggcatattgt 564
Query: 359 gaatgtctacctctggtttattcctctcatcagataagtgagtggaagtgtgaggatctc 418
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 gaatgtctacctctggtttattcctctcatcagataagtgaatggaagtgtgaggatctc 624
Query: 419 tagctgtgtagatagctgtgtagatagctgtgtaggggtggcttgatagaagaaagctca 478
|||||||||||| | ||| | |||||||||||||||||||||||||||
Sbjct: 625 tagctgtgtaga-a-ctg---------c-----aggggtggcttgatagaagaaagctca 668
Query: 479 tactttcccttcatctcttgagttctcaggagaaacctagatagagaaat 528
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 669 tactttcccttcatctcttgagttctcaggagaaacctcgatagagaaat 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 934
Length adjustment: 10
Effective length of query: 518
Effective length of database: 924
Effective search space: 478632
Effective search space used: 478632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
