Query= MSMg01no437_l12.b1 MSMg01no437_l12.b1 CHROMAT_FILE:
MSMg01no437_l12.b1 PHD_FILE: MSMg01no437_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:12 2005
(224 letters)
>mm_chr19_49474671_49475294
Length = 624
Score = 319 bits (165), Expect = 8e-92
Identities = 191/203 (94%), Gaps = 7/203 (3%)
Strand = Plus / Plus
Query: 1 cttcccagtttctgaagacttccaataagcagaggtacattttatttttgttgatgatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcccagtttctgaagacttccaataagcagaggtacattttatttttgttgatgatca 260
Query: 61 gtgagcttctataatgattgtttgtgatttttaacaataaatgtggtggtccaactataa 120
|||||||||||||||||||||||||||||||||||||||| ||| | || ||||
Sbjct: 261 gtgagcttctataatgattgtttgtgatttttaacaataagtgt-----taaaa--ataa 313
Query: 121 ctcaaggtaatgatatactgagaggctgataattagacatattcacataggtagattgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 314 ctcaaggtaatgatatactgagaggctgataattagacatattcacataggtagattaat 373
Query: 181 agacagacagacagatagacaga 203
||||||||||||||| |||||||
Sbjct: 374 agacagacagacagacagacaga 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space: 132225
Effective search space used: 132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no437_l12.g1 MSMg01no437_l12.g1 CHROMAT_FILE:
MSMg01no437_l12.g1 PHD_FILE: MSMg01no437_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:12 2005
(527 letters)
>mm_chr19_49632221_49633147
Length = 927
Score = 967 bits (500), Expect = 0.0
Identities = 521/528 (98%), Gaps = 3/528 (0%)
Strand = Plus / Minus
Query: 1 aaacagggcagggatctggaggcaagaactggtgcaaaggccatgaaagggtactgctta 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 aaacagggcagagatctggaggcaagaactggtgcaaaggccatgaaagggtactgctta 810
Query: 61 ctggcttgctccccatggcttacttagtctaatttcatatgaactcaagacttcctgtcc 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 809 ctggcttgctccccatggcttacttagtctactttcatatgaactcaagacttcctgtcc 750
Query: 121 agggtggccccatccacagtgggttggactctctcacatcaatcactaattaagaaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agggtggccccatccacagtgggttggactctctcacatcaatcactaattaagaaaatg 690
Query: 181 ccctat-aggctttcccacactcatatcttatggaagcatttcctcaattgaggctgcct 239
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ccct-tcaggctttcccacactcatatcttatggaagcatttcctcaattgaggctgcct 631
Query: 240 cttcccaacttactccagcttgtgtcaagttaacataaaacttgacataacactatttta 299
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cttcccaac-gactccagcttgtgtcaagttaacataaaacttgacataacactatttta 572
Query: 300 gaaaatttattcatatatacaacacagcctgatgctgtcagtagtaacattaagattcta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaaaatttattcatatatacaacacagcctgatgctgtcagtagtaacattaagattcta 512
Query: 360 tgtttaccacaagaggctcttactaacttttggcttctaacaacagaaatgtttatccac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgtttaccacaagaggctcttactaacttttggcttctaacaacagaaatgtttatccac 452
Query: 420 atagtctggagtctagatatttgaaaccaaggtattggaacgctgtgcgtgggactctac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 451 atagtctggagtctagatatttgaaaccaaggtattggaacgctgtgcgtggggctctac 392
Query: 480 gggagtccctcttcacctaaattcacctaaatatgaacttcctgtgtt 527
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gggagtccctcttcacctaaattcacctaaatatgaacttcctgtgtt 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
