BAC Information

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BAC

Clone NameMSMg01-438L04
Chromosome19 (Build37)
Map Location 54,134,513 - 54,134,706
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneLOC100043004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438L04.T7 (MSMg01no438_l04.b1)MSMg01-438L04.TJ (MSMg01no438_l04.g1)
ACCAG529231AG529232
length788751
length of high quality
(start - end)
214 (70 - 283)194 (121 - 314)
definitionCHROMAT_FILE: MSMg01no438_l04.b1 PHD_FILE: MSMg01no438_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:34 2005CHROMAT_FILE: MSMg01no438_l04.g1 PHD_FILE: MSMg01no438_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATATTTGCGGCGCTAAACGACTCCTATATTTCGAAACCCGCGGAATCC
CGTCCTCTTACAAATGCCAACTCCAGATAGAGTTTTTAATCTTTGTCAAG
CTGTTAGGAGGAAAACGCTATCTGATTTTGTTTTTGTAAAGGGCCAGATT
AGGGTATAATTGGCGTACAATGAAGGTCACATATGTAAAGAGTGTGGTTT
GGTCAGTTTTGACATAGGCGTGCATTTGTGCTGCTTTATGGATTTGGATA
TACCACATTTCTGTTTGCCTACCTGGTGGCGGGCGTTGGAGATGCTTCTA
GCTTGCACCACTATGTTTTTTTTTCATTTAGCGCACAAACCTGATAGCTC
ATTGCTGTCTACTTTCCCAAACCCTCCAGCACGGGACGCTCCTGCTCTCT
GTGTTTCACCCCCCCCCCCACTAATGCTCCTTCCTCACGATCGTACCGTT
AGTCTCCTCCACTTGTCCATGCTCTGATGTCTCTGTGCTACGTTGTGCCT
CTTTTCGTGCCCGTACTACTTCATCTTTTCCTCTCGCCCCTCTATTTCCC
TTCTCCTCGTTTTTTCTTTTTTTGTTCTCAACCCTACCTCCCTCCTTTTA
TCCTTTTTCTCTTCGCCACCTCTTCTTCCTCCTGTTTCCTCTTCTTTATT
TCTACCTCTCCCTTTTTCTCTTCCCCTCTCCTCCCTTTTTTTTTCTTTTC
CTTCCTTTTTATCTTCTTCCTTCTCTCTTCCTTCCCCTTAGGTTTTCCCC
TATCACCTAGCGTCCGCTCTCCTTCTCCTTTTCTCTTC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGCGAAAAACAGCAGCCTCATTTGGTTCCCATGGCCTTTATC
CAGCCACAGGAGTTACTCAGGCCTCATCTGCAAAGCTGGGAGCAGCCAAA
TGAATCATCTTACTTTCTACAGGAAGGCCCAGAAACTGGGTCAATGGGGG
AATTCCCAAGATCTTCACCACTGTTGCTGGGACAGAAAGCAGGGCACTGG
TGTCATTAAGCAAGTATCATCATCAAGAGGAACCGGTACCCATGAGACAA
CATCAAATGCCAAATTTTTTTTTTAGACCACTAAAACATAGCAGAGAACG
CGGTCACAGTGGCCACAGATCACCATAACAACAGAGAATGCGCTCTGACA
GGATGAGGCAAGTGCCCACCGAGAGGTCTAAGACGAACATTGACAACGTG
CAATGCAGTCATCATTGTGCCACAATGACCATTTGTGTACTTCAAGATGC
CTCTACCTTGCCATAATTCGGCCCTCATGCCTATCACCTCTTAATCCCAC
TACATTAGACCTACTTTATGTCTCTATGCTTCCCATGTTTATTTGATCTC
TTATATTTCTTATTCACCCTTCTCTTGTACTTGCCTCCCCGACTTCCTCA
TCTCAACACCACTCGCCCTCACTATTTTCGTAGCCAGGTCTTCTATTTTA
TCCCCCTAATTCCTTTTACATCGTTACTCCTCCTCCCCTTCTCTTTTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_l04.g1 MSMg01no438_l04.g1 CHROMAT_FILE:
MSMg01no438_l04.g1 PHD_FILE: MSMg01no438_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:34 2005
         (194 letters)



>mm_chr19_54134313_54134906
          Length = 594

 Score =  344 bits (178), Expect = 2e-99
 Identities = 190/194 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctcatctgcaaagctgggagcagccaaatgaatcatcttactttctacaggaaggccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcctcatctgcaaagctgggagcagccaaatgaatcatcttactttctacaggaaggccc 335

                                                                       
Query: 61  agaaactgggtcaatgggggaattcccaagatcttcaccactgttgctgggacagaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agaaactgggtcaatgggggaattcccaagatcttcaccactgttgctgggacagaaagc 275

                                                                       
Query: 121 agggcactggtgtcattaagcaagtatcatcatcaagaggaaccggtacccatgagacaa 180
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| 
Sbjct: 274 agggcactggtgtcattaagcaagtatcatcatcaagaggaactggtacctatgagacag 215

                         
Query: 181 catcaaatgccaaa 194
           || |||||||||||
Sbjct: 214 caccaaatgccaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)