BAC Information

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BAC

Clone NameMSMg01-438N24
Chromosome19 (Build37)
Map Location 28,949,179 - 28,949,570
singlet/doubletsinglet
Overlap geneSlc1a1
Upstream geneRfx3, LOC433235, Glis3, EG434460, EG627788, LOC545262
Downstream gene4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438N24.T7 (MSMg01no438_n24.b1)MSMg01-438N24.TJ (MSMg01no438_n24.g1)
ACCAG529365AG529366
length797798
length of high quality
(start - end)
392 (73 - 464)308 (74 - 381)
definitionCHROMAT_FILE: MSMg01no438_n24.b1 PHD_FILE: MSMg01no438_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:48 2005CHROMAT_FILE: MSMg01no438_n24.g1 PHD_FILE: MSMg01no438_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCCGCGGAA
TTCCTGTGAGTATCCTGCAATCATGTGACCACTCAGATCTTGAGGAGCAA
GAAAAGATAAGGAAAAGGCGCACACACACTGTGATGTAAGGCAAGGCAGA
AAACTGGCCCTGTGTGCTTTGTGTTATTGCATAGATTGTGTGTTCGTTAG
CTTGCAATAATGAAAGCTCCTTCTATGCTTGTCACTAATGTTCCTCTCAG
AAGAGCCCTGGGAGGACGAACATACACATTATATCAATGCTCAGTGTGAT
GACATGGCTCAGTAAGTATTCTGTTTTTAATCATTTTCCTTTGTCAGTAA
TGTTTATTTCTAGCTCAAATTAGTTTATGTACTAGTGAACTATTATTAAA
AAGGTAGTGAACTATTATAGGTATGTGCATGCCTGTGTTTAGGGTCCCTT
ACCGACAAATCCCTCCCATGNAATGCTGTTTTGTTTCTAAGTCCGAGCCC
AGTGCAATGCAGCTTCTATTCAGATTTCAATCCCAGCTTAGTTTTGTAAC
TGTGCCAAAGATAAAATCCCTGTCTCTGTAAGAAGAAAAATAAAAATCTT
TACCTGTTGTTGCTTGCAAACCCCTATCACACCCCCCACCCCCCCTTATT
TTTTGAACAAACATTATTCCCCAAAAATGCCCCTTTCACCGCGACTTCTC
TCCTCCTCATTTGATCCTTTCCTTCTTAAAAATCCCCTACCCTGCGGTCT
CTCTTCCCCTTCCGTTTATCTTCTCTTGGTCTCTCCCGTGCTCCCCT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGATGGCCTTGAAC
TCACAGAGATCCACTTGCCTCTGCTTCCCAAGGGCTGGGATTAAAGGCAT
GCACCACCACCACCACCGAGCCCTTAAAGCATTTAATTTAATAGATTCTC
CTTTCCCTCCCCTTCCCTCCCCTCCCCTCCCCTTCCCTCCCCTCCCCTCC
CCTCCCCTCTCCCTCTCCTCCCCTTTCCACCCCTCCCCTCCCTGCTCTCC
TCTCTTCTTTCCCAGGAACTCTATGCTATGGTGTGACCTAAACTGTGTGA
TTCCCTTGAATTACGCCCTCTTGTGCAAGGAGTCTGTGCTGTAGACTCCT
TGCTTCCTCCTTCGAGCCCCAAGTCTCTCCGCTTTGGGCTTGGAGCCTTG
GGAAGACAGCAAGCACCCCGGGATGTTTCCACCTTCATGGCCCCTGGCTG
AAGGCCTGCTGTTAGAATAAACTAGTCCTTACGGCGTCATGTTTATGTCT
GAAACTTGGGTTGTTGGATCAGTCAATCCCTATAATTTATTTGTTATCTT
AATCTTCCTTGTTGGAAGGTAATTATATGGCTCGACTTATTGACCCCATT
CCCTACCATCTAGTTGCTTTTTTCCCATCTTCTTATATCTCGCCACGTTG
CTCCCCTCTTTTTTTATATCTACACCCCTTTCATATTATTTACCACTTTA
ATCCTCTCTATATCTTCTTCCATATTCTCACCTTACCTAATATAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_n24.b1 MSMg01no438_n24.b1 CHROMAT_FILE:
MSMg01no438_n24.b1 PHD_FILE: MSMg01no438_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:48 2005
         (392 letters)



>mm_chr19_28948979_28949770
          Length = 792

 Score =  704 bits (364), Expect = 0.0
 Identities = 385/396 (97%), Gaps = 8/396 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgaccactcagatcttgaggagcaagaaaagataaggaaaaggcgcacacacactgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 atgtgaccactcagatcttgaggagcaagaaaagataaggaaaaggcgcagacacactgt 260

                                                                       
Query: 61  gatgtaaggcaaggcagaaaactggccctgtgtgctttgtgttattgcatagattgtgtg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtaaggcaaggcagaaaactggccttgtgtgctttgtgttattgcatagattgtgtg 320

                                                                       
Query: 121 ttcgttagcttgcaataatgaaagctccttctatgcttgtcactaatgttcctctcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcgttagcttgcaataatgaaagctccttctatgcttgtcactaatgttcctctcagaa 380

                                                                       
Query: 181 gagccctgggaggacgaacatacacattatatcaatgctcagtgtgatgacatggctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagccctgggaggacgaacatacacattatatcaatgctcagtgtgatgacatggctcag 440

                                                                       
Query: 241 taagtattctg----tttttaatcattttcctttgtcagtaatgtttatttctagctcaa 296
           |||||||||||    |    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagtattctgggggt----aatcattttcctttgtcagtaatgtttatttctagctcaa 496

                                                                       
Query: 297 attagtttatgtactagtgaactattattaaaaaggtagtgaactattataggtatgtgc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attagtttatgtactagtgaactattattaaaaaggtagtgaactattataggtatgtgc 556

                                               
Query: 357 atgcctgtgtttagggtcccttaccgacaaatccct 392
           |||||||||||||||||| |||||||||||||||||
Sbjct: 557 atgcctgtgtttagggtctcttaccgacaaatccct 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)