Query= MSMg01no439_d01.b1 MSMg01no439_d01.b1 CHROMAT_FILE:
MSMg01no439_d01.b1 PHD_FILE: MSMg01no439_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:14 2005
(466 letters)
>mm_chr19_42703286_42704154
Length = 869
Score = 822 bits (425), Expect = 0.0
Identities = 457/469 (97%), Gaps = 3/469 (0%)
Strand = Plus / Minus
Query: 1 ccctctgtgtagggaaggttgggtctacccacattctaccacccagccaaaaataacttc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ccctctgtgtagggaaggtcgggtctacccacattctaccacccagccaaaaataacttc 610
Query: 61 aacattagtttcacggagggtagaagaccaggggatcttatgcaagagttgctctggccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aacattagtttcacggagggtagaagaccaggggatcttatgcaagagttgctctggccg 550
Query: 121 gtccagggttctggcctggccaatgagcaggaagagacctgcatggtcctctctagtcgt 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 549 gtccagggttctggcctggccaaagagcaggaagagacctgcatggtcctctctagccgt 490
Query: 181 atgtgtcactcatacctactctgtcccacaaggaattgctgaagtcatgtcttaaatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atgtgtcactcatacctactctgtcccacaaggaattgctgaagtcatgtcttaaatcaa 430
Query: 241 gaactttgcttctcattattgctttgctgacatccaaccctttacctgcatatcatcaat 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaactttgcttctcagcattgctttgctgacatccaaccctttacctgcatatcatcaat 370
Query: 301 gtaccaacagccatagccaatataccaacagccttaccatctgaaacaacagccacagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtaccaacagccatagccaatataccaacagccttaccatctgaaacaacagccacagtc 310
Query: 361 aatgtaacaacagccacagtcagtgtaaca---gccacagtcagtgtaacaacagccata 417
| |||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct: 309 agtgtaacaacagccacagtcaatgtaacaacagccacaatcagtgtaacaacagccata 250
Query: 418 gttagtgtaacaaccaccacacaatatgtaacaactctagtcaatgtaa 466
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 249 gttagtgtaacaacaaccacacaatatgtaacaactctagtcaatgtaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 869
Length adjustment: 10
Effective length of query: 456
Effective length of database: 859
Effective search space: 391704
Effective search space used: 391704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_d01.g1 MSMg01no439_d01.g1 CHROMAT_FILE:
MSMg01no439_d01.g1 PHD_FILE: MSMg01no439_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:14 2005
(239 letters)
>mm_chr19_42538534_42539172
Length = 639
Score = 451 bits (233), Expect = e-131
Identities = 236/237 (99%)
Strand = Plus / Plus
Query: 1 ttgacaatgttgagtcagtccttggcaggacattgccaatgttgtggcagttgggacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgacaatgttgagtcagtccttggcaggacattgccaatgttgtggcagttgggacaat 260
Query: 61 tgatgttggccaagtggcttagttagctaacctatctgctttctttatacatggccgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgttggccaagtggcttagttagctaacctatctgctttctttatacatggccgagt 320
Query: 121 ttgcccctgttctggggagtcattgaaagatcaatggtagtcctttggtctctgcaggat 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttgcccctgttctggggagtcattgaaagatcaatggtagtcctttggtccctgcaggat 380
Query: 181 gcgtttgcaatttcaagggcgggtggaggtaaatggaagatggaggggtatatttgt 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgtttgcaatttcaagggcgggtggaggtaaatggaagatggaggggtatatttgt 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
