BAC Information

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BAC

Clone NameMSMg01-439N01
Chromosome19 (Build37)
Map Location 49,350,874 - 49,497,869
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439N01.T7 (MSMg01no439_n01.b1)MSMg01-439N01.TJ (MSMg01no439_n01.g1)
ACCAG530078AG530079
length723715
length of high quality
(start - end)		491 (74 - 564)561 (78 - 638)
definitionCHROMAT_FILE: MSMg01no439_n01.b1 PHD_FILE: MSMg01no439_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:02 2005CHROMAT_FILE: MSMg01no439_n01.g1 PHD_FILE: MSMg01no439_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,350,874 - 49,351,362)(49,497,309 - 49,497,869)
sequence
NNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTCTTTTCGCAGGATGTAGTATTTGGCTTCAGTCACCTTC
TCTGAACTATACATAGTCTTGTGTGAAATGCCTGCCTTCCTGCTATCCTT
TCAGATATAATGGTGACAGAGACAATCTCTGTAGTCAGAGTGACTTGGTT
CAAATGCTGTCTTTACCAATTAATAGCTATGTGACTTTGAGAAAATAGAT
CTCTGTGTTTAGGTGTTCACATCTGGAAGCAAGATAATAGAAAGACAATG
ACATCTATGGAATCAGAGGTTTACTGAGAAGATTATACAAAATACTTATG
TAGAGTCTTCAACAAGATCTTCTTTATAGATTTCAAAAGAGTTTAATGTA
GTCAAGTCCTTTACAGTGGGTAGGCTTTGTATGTGAAATAGGTTATATGT
TTTTGGAAAACCTTTGGTCCCTTCTTGGAACTTTATGGATCAAGTTAGAA
GTAAACCATACATAAGACATGGCATTTCTTTCTTTACCATATACTGAAGA
GGAACTGACCCATCATATCAATATGAAAATAGAGAACAGAAGACCTAAAG
TGCTTTAAATTTTGGAACAGAGGCAGCAATTTGGATGAGCATCAAGGAAA
GATTCTAGAAAAGTCATATAGGATCTTGGAACTCTCCACTAAGGCAGAAC
TCTGAATTCCCCTGAGGTAATAN

CCGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGGAGAGGAAACAAGGCAG
GAAGGTAATAAAGGCTTCCTAGCAAGCTGCAGAATGGAACAGCTGCAAGA
TCTATTCACCTCCATGTAAACAGCTCACCAAGGAGGAGGTTTTCAGTGAA
GCCATTGGGGTGAAAGCCCTGAAAAATGCCCCAGTCTTTTCCTGCTGGGT
TTATGAACCGCCTTGGCAGCCTAACAGCAGCACATTATATGAAATTGCTG
GTTTACTCTACCTTGTCTGCTTTTATTTTCACAAGGAATCCTTGTTATTC
AGTGGAATTAGCAAAGGAATTCATTAAGTGCCGGCTACAAAGACTGCACA
GTATTTATTCCAGTAATAAAAAAGTCTAATTTTGCAATAACATGGCAATC
TTTGGGAAGAGCTGGCTGATGGAATAAGTTAGTTTGGTAAAATTTGACTC
TTTTGGTCCTTATGATTATGGTGCTTGTGAGAAGCAGACAGAGAGGGGAC
TTGCTTGCCAGCTAAGCACTTTTACACAACAAAACAAATTCTCTTCCACA
GAATCCTCCTGTAATAAAAACAAAATAGGGGAAAATGTTGTCTAGTTCAG
ACAGCAGAAACAGCAAGCAAACTCACTCTTAATTAATGTGGACTGAGGCT
AATGGTGTTCAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_n01.b1 MSMg01no439_n01.b1 CHROMAT_FILE:
MSMg01no439_n01.b1 PHD_FILE: MSMg01no439_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:02 2005
         (491 letters)



>mm_chr19_49350674_49351564
          Length = 891

 Score =  884 bits (457), Expect = 0.0
 Identities = 481/489 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtagtatttggcttcagtcaccttctctgaactatacatagtcttgtgtgaaatgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtagtatttggcttcagtcaccttctctgaactatacatagtcttgtgtgaaatgcct 260

                                                                       
Query: 61  gccttcctgctatcctttcagatataatggtgacagagacaatctctgtagtcagagtga 120
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctcctcctatcctttcagatataatggtgacagagacaatctctgtagtcagagtga 320

                                                                       
Query: 121 cttggttcaaatgctgtctttaccaattaatagctatgtgactttgagaaaatagatctc 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 cttggttcaaatgctgtctttaccaattaatagctatgtgactttgaggaaatagatctc 380

                                                                       
Query: 181 tgtgtttaggtgttcacatctggaagcaagataatagaaagacaatgacatctatggaat 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tgtgtttaggtgttcacatctggaagcaagataatagaaaaacaatgacatctatggaat 440

                                                                       
Query: 241 cagaggtttactgagaagattatacaaaatacttatgtagagtcttcaacaagatcttct 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 cagaggtttactgagaagattatacaaaatacttatgtagactcttcaacaagatcttct 500

                                                                       
Query: 301 ttatagatttcaaaagagtttaatgtagtcaagtcctttacagtgggtaggctttgtatg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ttatagatttcaaaagagtttaatgtagtcaagtcctttacagtggataggctttgtatg 560

                                                                       
Query: 361 tgaaataggttatatgtttttggaaaacctttggtcccttcttggaactttatggatcaa 420
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaataggctatatgtttttggaaaacctttggtcccttcttggaactttatggatcaa 620

                                                                       
Query: 421 gttagaagtaaaccatacataagacatggcatttctttctttaccatatactgaagagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttagaagtaaaccatacataagacatggcatttctttctttaccatatactgaagagga 680

                    
Query: 481 actgaccca 489
           |||||||||
Sbjct: 681 actgaccca 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no439_n01.g1 MSMg01no439_n01.g1 CHROMAT_FILE:
MSMg01no439_n01.g1 PHD_FILE: MSMg01no439_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:03 2005
         (561 letters)



>mm_chr19_49497109_49498069
          Length = 961

 Score = 1077 bits (557), Expect = 0.0
 Identities = 560/561 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcaggagaggaaacaaggcaggaaggtaataaaggcttcctagcaagctgcagaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 761 tctcaggagaggaaacaaggcaggaaggtaataaaggcttcctagtaagctgcagaatgg 702

                                                                       
Query: 61  aacagctgcaagatctattcacctccatgtaaacagctcaccaaggaggaggttttcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aacagctgcaagatctattcacctccatgtaaacagctcaccaaggaggaggttttcagt 642

                                                                       
Query: 121 gaagccattggggtgaaagccctgaaaaatgccccagtcttttcctgctgggtttatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaagccattggggtgaaagccctgaaaaatgccccagtcttttcctgctgggtttatgaa 582

                                                                       
Query: 181 ccgccttggcagcctaacagcagcacattatatgaaattgctggtttactctaccttgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ccgccttggcagcctaacagcagcacattatatgaaattgctggtttactctaccttgtc 522

                                                                       
Query: 241 tgcttttattttcacaaggaatccttgttattcagtggaattagcaaaggaattcattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgcttttattttcacaaggaatccttgttattcagtggaattagcaaaggaattcattaa 462

                                                                       
Query: 301 gtgccggctacaaagactgcacagtatttattccagtaataaaaaagtctaattttgcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtgccggctacaaagactgcacagtatttattccagtaataaaaaagtctaattttgcaa 402

                                                                       
Query: 361 taacatggcaatctttgggaagagctggctgatggaataagttagtttggtaaaatttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 taacatggcaatctttgggaagagctggctgatggaataagttagtttggtaaaatttga 342

                                                                       
Query: 421 ctcttttggtccttatgattatggtgcttgtgagaagcagacagagaggggacttgcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctcttttggtccttatgattatggtgcttgtgagaagcagacagagaggggacttgcttg 282

                                                                       
Query: 481 ccagctaagcacttttacacaacaaaacaaattctcttccacagaatcctcctgtaataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ccagctaagcacttttacacaacaaaacaaattctcttccacagaatcctcctgtaataa 222

                                
Query: 541 aaacaaaataggggaaaatgt 561
           |||||||||||||||||||||
Sbjct: 221 aaacaaaataggggaaaatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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