BAC Information

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BAC

Clone NameMSMg01-441J20
Chromosome19 (Build37)
Map Location 41,810,544 - 41,810,922
singlet/doubletsinglet
Overlap geneSlit1
Upstream geneEntpd1, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181
Downstream geneArhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441J20.T7 (MSMg01no441_j20.b1)MSMg01-441J20.TJ (MSMg01no441_j20.g1)
ACCAG531455AG531456
length785815
length of high quality
(start - end)
400 (43 - 442)54 (99 - 152)
definitionCHROMAT_FILE: MSMg01no441_j20.b1 PHD_FILE: MSMg01no441_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:28 2005CHROMAT_FILE: MSMg01no441_j20.g1 PHD_FILE: MSMg01no441_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTTTTTCCCCTCTGGTGTACGATAGGTGGAGTGGTTTTAGAAGGTA
GCGGCCAGCAGTGGGGAGAAAGTTGACTATGTGATTTCTGTAACTAAGAT
TTTTTTTGTCTTTGCTACAGTTTTATTCTATTTTTTAAATTAAAAGCCTT
TCCCCCTAAAATGGCTTTAGTTGGTTTAATTCGTAAAATAGTTGAATGAA
TTATAAATTCAGATAGGTACCATGCACGTTTCAACCAGCTAACATGGTAC
AGTTAGCCGGCTGAGGTGTTTAGCATAGTTATGACATTATTAACTAAGTA
ATGGGCTTTCCCCCTCTTTTCACCCACAAATTGTCCCTTGAATCCCAGGG
GTTCATACTGTATTTAGTTACATCTCTCCTCAGCCCCCTTCAGTCTGACG
AAGGCCTTTTGTCTGTTTTGGCTTTTCATAACCTTGACTCTTTGGAAAGA
TCAATGGCTAGTTATTTTGTCTAAAGCTTATTGATTTGGTTGTTTAGTTG
TCCGCCTGGCTAACCTTTGAAACAGAGTTTTACTGTCTTCCTACCCGGTC
TAAAACTTTTTATGTATTACCCCGTGTTCCTCCATTCCTAAGACCACCAT
TTTTCCTGTTTTTTGCCCCTTTCCATCTTCGCTTATTTTTTTATTCCCTC
TTTTTGTTTACACCTCTCTTCTCTTTTTGTCTCTCCATTTATTTCCCAAT
TCCTCCCCTGTTTTTTATCTTCTTGATTTCACCCN
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXNCCGAATGAANTCCAGGGAAAAT
GGTGCACTCAGCACCATCAGTGACCTTCCTCTCCTCGCAAANAACTCTGC
CTTCCCAAAAATGGNNNCATCAAACAAACAATGAAACACGCTTNNNNNNC
NNNAATTCTTGCCCTCNNTANATTTAAAGAAACGCGTATGGGGTTNNNTG
ATTTTTTNNNGAAACCCGAATAGAAGAATGGAGGTTAACCCCTTTTGCTG
GGCAAAAAAATAAGCGGGTGTACACGCTAGTAAGTTTTTTTTTCCTTTTT
TNTAAAAAAAAATCTTTTAAAATCCCACCCTATTTTTTGGNTTCTAANNN
NAAAATTTTTCTCTTTGNCCCCTTTTTCCCCCTTTTTATAAAAAAAAANN
NNNGGGCCCCCCCCCCAAAAGTCCCCACACGATAGCCACCCCTTATAAAA
ATTCTCAAAATTCTCCCCCTCAAAAAAAGTTTTTTCCCCCCAAAAATTAA
TTTTTTTTTTTTTTTTCCCATTTATTTTTTTTTTTTTTTTNTATTAATTT
TTTCTTCTTTTTTTTTTTTTCTTTCCCCCCCTTCCTTTCCCNNCCTCCTT
CCTCTTTTTTTTTTTTTTTTTTTTNTTTTCCTTTTTTNTTTCTCTCTTTT
TTTTCCTTTTNCCCCTTNTTTTTTTTTTCCTNTNNNCCACCCCCCCCCTT
TTTTCTTCCCCTTCTTTTTTTCCCCCCCCCTCCTTTTCTCTTCTTTCTAT
ATATCAAGCAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_j20.b1 MSMg01no441_j20.b1 CHROMAT_FILE:
MSMg01no441_j20.b1 PHD_FILE: MSMg01no441_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:28 2005
         (400 letters)



>mm_chr19_41810323_41811122
          Length = 800

 Score =  663 bits (343), Expect = 0.0
 Identities = 370/379 (97%)
 Strand = Plus / Minus

                                                                       
Query: 22  ctctggtgtacgataggtggagtggttttagaaggtagcggccagcagtggggagaaagt 81
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 600 ctctggtgtacgataggtggagtggttttagaaggtagcggccagaagtggggagaaagt 541

                                                                       
Query: 82  tgactatgtgatttctgtaactaagattttttttgtctttgctacagttttattctattt 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgactatgtgatttctgtaactaagattttttttgtctttgctacagttttattctattt 481

                                                                       
Query: 142 tttaaattaaaagcctttccccctaaaatggctttagttggtttaattcgtaaaatagtt 201
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 480 tttaaattaaaagcctttccccctaaaatgactttagttggtttaattcgtaaaatagtt 421

                                                                       
Query: 202 gaatgaattataaattcagataggtaccatgcacgtttcaaccagctaacatggtacagt 261
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 420 gaatgaattagaaattcagataggtaccatgcacgtttcaaccagctaacatggtgcagt 361

                                                                       
Query: 262 tagccggctgaggtgtttagcatagttatgacattattaactaagtaatgggctttcccc 321
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tagccggctgaggtgtttataatagttatgacattattaactaagtaatgggctttcccc 301

                                                                       
Query: 322 ctcttttcacccacaaattgtcccttgaatcccaggggttcatactgtatttagttacat 381
           ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 300 ctcttttcacccacatattgccccctgaatcccaggggttcatactgtatttagttacat 241

                              
Query: 382 ctctcctcagcccccttca 400
           |||||||||||||||||||
Sbjct: 240 ctctcctcagcccccttca 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)