BAC Information

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BAC

Clone NameMSMg01-442M19
Chromosome19 (Build37)
Map Location 27,712,557 - 27,712,949
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442M19.T7 (MSMg01no442_m19.b1)MSMg01-442M19.TJ (MSMg01no442_m19.g1)
ACCAG532358AG532359
length817828
length of high quality
(start - end)
393 (71 - 463)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no442_m19.b1 PHD_FILE: MSMg01no442_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:08 2005CHROMAT_FILE: MSMg01no442_m19.g1 PHD_FILE: MSMg01no442_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGGATCCGCGGA
ATTCCAAGGGATTGCGGGAATTCAGGAGCCACTCAGCTTCAGTGCCCTCA
TTTTTTATGATGCCTTTAACAAATTCAGTGCCAATACATTCTACTAATTC
CCCAGAGTCAGGATCCATGGGGCTGGAAGAAGGAATGTGGTTCATTTCCT
GTGACTTCCAGATTAAGTCAGTACTAAGTCATTACCAAGTCAAAGCATCT
GATGTATATACTACACTCATGTTTAATGTAAAAATAACCATTATTGTCTT
TTCTTACCACCAAACAATGTATATTATTTACTTGGGAGAAATAAAAATAC
GGGTATAAGTACAGCATAGCCTGAAATTCTAGAAAAAAAAACCATAAAGT
TATTAAAATTATAGTGTCTACATATCCAGACATATATTATTTCCAAATAC
ATATATATCATTTCTAAGTATATGTATTTTTGTAAAAGCTATACTGCATA
ACACATTTTGTCCCTTTAAAATAATGAAAAAAAACTATCCCGGTTAATAT
TTTTAAATATTCCTAAGGGGTCCCTTATGCCCCTGATATTTTCACCTCTT
TTATTTTTCCCCCATTTGTGGGGCTCTTAATTTTTTTCCTCCCTTTTTTA
AAAAGTGGCCTCTTACATTGTAATTTATAACATTTCTCTTTTATTTTTTT
TACAGTGCTCCCTTTATTTTTTTCGGAGTGTCACATGACGCTCTAAATTT
TCATAACTCCTTGTGATACGTGCTTTATTTTCTCTCTCCCTCTTTTTTAA
CTAATATATTTTCTCCG
NTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCAGAAGAGCCTGGTTTTC
AGTGTCTATTGAGCACTTAAGAAACGCCTGACAAGTAAATGCCCCCCAGA
AGGAAAAGAACTACAGAATACCCCTGTCTGAGTTAGGGTTCCTATGGCTA
TGAAGAGACAGCATGAGCAAGGCAACTCTTGAGTTGTGTTGAGTTGAGTT
AAATATCTCTCTTAGACATTTAACTGGGGCTGTCTTAAAGGTTCTGAAAT
TTAGTCCTTTGTCATGGCAGAAAGTTTGTTTTGCACACAAGGCAGAAATG
GTGATGGAGAAGTTCTACATCTGGATTAGCAGGCAACAGGGAAAGGCAAT
GCCACACTGGGTCTGGTTTGAGCATAGGAGACCTCATACCCTCATTCTCT
TAAGCTGGCTCCCCCCCTTGTTTGGCGCTACCCTTGGCAGATATCCCTCC
TTGTGTGTTTCTCCATTATCTTGGTGTCCCAAAGACAATTTTTTGCTTCC
CCTCCCCCAGTTTTCGAACAATACTTTCCTCCTGGCTCTCCCTGGTTGCC
CTCCCTCCTTCTCCCCCCTTTTCCTTCTTCTTCTTTTCTTTTTTTTTCCT
TTTTTTTTCCCTCTTCTCGATCCTCTCTTCTCTTTTTTTCCTCCACCCTC
TTCTTCCTATGTCCCCGCCCGCTCCTTCTCCTTCCTCATCCATACTCTGT
CTCTATTATTCTTCTTCTCTTCTGTTTATCTACTGCTCTTTCTCATTTTT
ACTGATCCTACCACCCTCTCTCCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_m19.b1 MSMg01no442_m19.b1 CHROMAT_FILE:
MSMg01no442_m19.b1 PHD_FILE: MSMg01no442_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:08 2005
         (393 letters)



>mm_chr19_27712357_27713149
          Length = 793

 Score =  721 bits (373), Expect = 0.0
 Identities = 388/393 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaggagccactcagcttcagtgccctcattttttatgatgcctttaacaaattcagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttcaggagccactcagcttcagtgccctcattttttatgatgcctttaacaaattcagtg 534

                                                                       
Query: 61  ccaatacattctactaattccccagagtcaggatccatggggctggaagaaggaatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ccaatacattctactaattccccagagtcaggatccatggggctggaagaaggaatgtgg 474

                                                                       
Query: 121 ttcatttcctgtgacttccagattaagtcagtactaagtcattaccaagtcaaagcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttcatttcctgtgacttccagattaagtcagtactaagtcattaccaagtcaaagcatct 414

                                                                       
Query: 181 gatgtatatactacactcatgtttaatgtaaaaataaccattattgtcttttcttaccac 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gatgtatatgctacactcatgtttaatgtaaaaataaccattattgtcttttcttaccac 354

                                                                       
Query: 241 caaacaatgtatattatttacttgggagaaataaaaatacgggtataagtacagcatagc 300
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 353 caaacaatgtatattaattacttgggagaaataaaaatatgggtataagtacagcatagc 294

                                                                       
Query: 301 ctgaaattctagaaaaaaaaaccataaagttattaaaattatagtgtctacatatccaga 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctgaaattctagaaaaaaaacccataaagttattaaaattatagtgtctacatatccaga 234

                                            
Query: 361 catatattatttccaaatacatatatatcattt 393
           ||||||||||||||||||||||||| |||||||
Sbjct: 233 catatattatttccaaatacatatacatcattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)