BAC Information

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BAC

Clone NameMSMg01-444F14
Chromosome19 (Build37)
Map Location 26,757,745 - 26,758,273
singlet/doubletsinglet
Overlap geneSmarca2
Upstream geneEG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444F14.T7 (MSMg01no444_f14.b1)MSMg01-444F14.TJ (MSMg01no444_f14.g1)
ACCAG533537AG533538
length734741
length of high quality
(start - end)
48 (253 - 300)531 (74 - 604)
definitionCHROMAT_FILE: MSMg01no444_f14.b1 PHD_FILE: MSMg01no444_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:13 2005CHROMAT_FILE: MSMg01no444_f14.g1 PHD_FILE: MSMg01no444_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAAATTGCGGCGCTAAAAGATCACATAGTTTCCCACCCGCGGAANNCN
NNCAGCTTATCCCCACCAGGAGGGGCANCNAACGANANGNAAACACCAAA
GAAACCAGGGTTTTCCCCCGACACAAACACGGCGGNGGACCCGGCCAACN
ACCANATGGCACACAACAAGGGCCCNNGAGAGANGCCAAACCAANCGGAA
AGAGAAANCCAGCCCCACCGAAAAAGGGAGAAACACNCCCCACTTTTTAT
CCTTTTAAAAGAATCATCTCTACAACTTTGCTCCTCTTCCATTGCCTGGC
AAACGGCACCTTTTATCTTTCAGCCACCGAGCGNGCAANACGGCCACCCG
GGATTTTTTTCTCCCCCCAACCCATTTCTCCAGGATGTGTGATCAGTGAC
TTCCTCCCGCAGGTCAATACTTTAACATCCAGTCCGCCGAAGCCCCAGAT
ATCCTGAACTGCCCTTTTCTAACCAAGGCTATGAAGTCTAAAAAAACCTC
ATCACACACGGGAACTCGCAACCTACCGATGATCCAGATAATCATTTCCC
CATACTAGCAACATTGAAAACATCTGGACATTGCATTGTAACTTTGATCC
CCCACATCGCGCCCGCTTAATAAATGCCCCGTTACCAACAATTTTTTTTT
TCTTAAACTCCCCCTTTTCGCCATTTAACAACTGGTAACCCCATCCCCAA
ATTTGGCTGTAGCCCCCACACCCCCATTTATATG
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGAAGGAAGTCTCACAGAGTGAAACT
CATTATGGATTTCATTGCCTACTGAAATCACACATGCTATCAAGACAGAT
TGAGGCCAGCCATCTAACACCTCCAAATTCTCTCCCTACCTGCCTGTCCC
ATGGGAATAAAATTTATGACCTCCAAATAAGTGTCTATGCCTCAGCTCCT
AGATCTGTGGGAAACAGTCCTAGAAAGCAAGTTTCATGTTAATAGTAGGA
ACAGTCCCAGACTTCTTTTAATATGGGCAGCAATAAAGACTGACTTAAGG
CAGACGGACACACAATGGGAAAAGGGGGCAAGGGTTTGTGTGTTCCTATG
TCCGTTTAAGCCCTTGACTTTTCTTGTGTCCAGTGCAGAAACAAGCAGAA
GGATGTGTGCTTGAGTATGGAAATGGGAGAACAAGAGTGGGTCACCTTTA
TGCTCCTCCATTACAGCCCTGTCTGTGGTGCTAGGAATGAAAATGGCCCC
ACAGACTCATGGGGAATGGCAGAATTAGGAGGTGTGGCCTTGTTGGAGTA
GGGTGACCTTGGTGGTGTCACTGTGGGATGAGCTTTGTGGCTCCAGATGC
TTAAGCCAGGCCCAACATCTCTTTCCTTTTCTGATGCAGGCAGATCTGGA
TGTAAAACTCTCAGTTCCGTTTCCCGTATCTTGTCTGCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_f14.g1 MSMg01no444_f14.g1 CHROMAT_FILE:
MSMg01no444_f14.g1 PHD_FILE: MSMg01no444_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:13 2005
         (531 letters)



>mm_chr19_26757624_26758554
          Length = 931

 Score =  907 bits (469), Expect = 0.0
 Identities = 514/533 (96%), Gaps = 8/533 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaggaagtctcacagagtgaaactcattatggatttcattgcctactgaaatcacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ctgaaggaagtctcacagagtgaaactcattatggatttcattgcctactgaaatcacac 591

                                                                       
Query: 61  atgctatcaagacagattgaggccagccatctaacacctccaaattctctccctacctgc 120
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 590 atgctatcaagccagattgaggccagccatctaacacctccaaattctcttcctacctgc 531

                                                                       
Query: 121 ctgtcccatgggaataaaatttatgacctccaaataagtgtctatgcctcagctcctaga 180
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 530 ctgccccatgggaataaaatttatgacctccaaataagtgtctatgtctcagctcctaga 471

                                                                       
Query: 181 tctgtgggaaacagtcctagaaagcaagtttcatgttaatagtaggaacagtcccagact 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tctgtgggaaacagtcctggaaagcaagtttcatgttaatagtaggaacagtcccagact 411

                                                                       
Query: 241 tc----ttttaatatgggcagcaataaagactgacttaaggcagacggacacacaatggg 296
           ||        ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcacag----aatatgggcggcaataaagactgacttaaggcagacggacacacaatggg 355

                                                                       
Query: 297 aaaagggggcaagggtttgtgtgttcctatgtccgtttaagcccttgacttttcttgtgt 356
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 354 aaaagggggcaagggtttgtgtgttcctatgtccgttcaagcccttgacttttcttgtgt 295

                                                                       
Query: 357 ccagtgcagaaacaagcagaaggatgtgtgcttgagtatggaaatgggagaacaagagtg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccagtgcagaaacaagcagaaggatgtgtgcttgagtatggaaatgggagaacaagagtg 235

                                                                       
Query: 417 ggtcacctttatgctcctccattacagccctgtctgtggtgctaggaatgaaaatggccc 476
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 234 ggtcacctttatactcctccattacagccctgtctgtggtggtaggaatgaaaatggccc 175

                                                                
Query: 477 cacagactcatggggaatggcagaattaggaggtgtggccttgttggagtagg 529
           ||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 174 cacagactcatagggaatggcagaattaggaggcgtggccttgttggagtagg 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)