Query= MSMg01no444_h21.b1 MSMg01no444_h21.b1 CHROMAT_FILE:
MSMg01no444_h21.b1 PHD_FILE: MSMg01no444_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:24 2005
(219 letters)
>mm_chr19_24543195_24543811
Length = 617
Score = 331 bits (171), Expect = 2e-95
Identities = 207/219 (94%), Gaps = 2/219 (0%)
Strand = Plus / Minus
Query: 1 gaattctactcgggttgcttctttacctctttcctcatgcaaaagtgggaacaaagtctt 60
|||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 417 gaattctactcgtg-tgcttctttgcctctttcctcatgcaaaagtaggaacaaagtctt 359
Query: 61 ttactttattccctaagacctgagcatagcaagatacttacccaagtgttttcagagtgg 120
|||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 358 ttactttagtccctaagacctgagcatagcaagttacttacccaagtgttttcaaagtgg 299
Query: 121 atgaatcaatgggtacatggataaatgataatttttttctgtttggttggttggtttggt 180
|||||||| || ||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 298 atgaatcagtgagtacatggataaatgataa-ttttttctgtttgtttggttggtttggt 240
Query: 181 tttgattttgtgatatttgtgttgagattctttttcttc 219
||||||||||||||||||||| |||||||||||||||||
Sbjct: 239 tttgattttgtgatatttgtggtgagattctttttcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 617
Length adjustment: 9
Effective length of query: 210
Effective length of database: 608
Effective search space: 127680
Effective search space used: 127680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no444_h21.g1 MSMg01no444_h21.g1 CHROMAT_FILE:
MSMg01no444_h21.g1 PHD_FILE: MSMg01no444_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:24 2005
(244 letters)
>mm_chr19_24379659_24380298
Length = 640
Score = 410 bits (212), Expect = e-119
Identities = 235/244 (96%), Gaps = 4/244 (1%)
Strand = Plus / Plus
Query: 1 catctatggtcttcctgcgcaataggtatgcatatgtgtttgtccactgccacttaaata 60
|||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |
Sbjct: 201 catctacggtcttcctgcgcaacaggtatgaatatgtgtttgcccactgccacttaaa-a 259
Query: 61 taataaaatgtgaaacatgtaattatgaaacataaagagataatgcaaggataaacccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taataaaatgtgaaacatgtaattatgaaacataaagagataatgcaaggataaacccca 319
Query: 121 agtttagccactgtatccacagcctacagcaaattgttttatcccttaatgatgctccct 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 320 agtttagccactgtatccacagcctacagcaaattgctttatcccttaatgatgctccct 379
Query: 181 ccacacagaagaaaaagaagatgtgtctcccaaaggggttagctaagatgctaatagaat 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccacacagaagaaaaaga---tgtgtctcccaaaggggttagctaagatgctaatagaat 436
Query: 241 gtcc 244
||||
Sbjct: 437 gtcc 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 640
Length adjustment: 9
Effective length of query: 235
Effective length of database: 631
Effective search space: 148285
Effective search space used: 148285
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
