BAC Information

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BAC

Clone NameMSMg01-445G17
Chromosome19 (Build37)
Map Location 29,884,703 - 29,885,101
singlet/doubletsinglet
Overlap geneRanbp6
Upstream geneSlc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik
Downstream geneIl33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445G17.T7 (MSMg01no445_g17.b1)MSMg01-445G17.TJ (MSMg01no445_g17.g1)
ACCAG534355AG534356
length838770
length of high quality
(start - end)
---399 (67 - 465)
definitionCHROMAT_FILE: MSMg01no445_g17.b1 PHD_FILE: MSMg01no445_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:36 2005CHROMAT_FILE: MSMg01no445_g17.g1 PHD_FILE: MSMg01no445_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTATACGACTCACAAATGCCCGAGGTCCGCNGGATTCTGTGT
TTGTCTGTACGAGTGTGTGTGTGTGTGTGTGTGTGTGACAGAANAATAGT
AATTTTTTTCCCCCCCTAGCAGGCGAGACAACGGAAGACAGGCAGCCTAA
ACCCGCGTTTGGGGGGGGGGGCGAACCACCCTACGATGAGCCTGACCGCC
GCGCCAGAATGCTACCCCAAATCTCCAGCTAGATATCATACTCTTTTTTT
TGCCGGAGACTTCAAATAACCAATGACCCCCCCCCCTATTTCACCACCCC
CAGACACCCCAACCCCCCCCTTTTACTAAATTTACACACCCCCCAACCAG
CAACCCAGTACCACACTCACACTTTCTTTTCCCCCCCCCCCCTATCCCCT
AACCCAAAATATGACCCCAACCTATAGATCCACTCCCCCTCCTTTACCCA
CTACTATCTAATTCCCCCCTTCACCCTCCTCCTATACCCCCCCTATTTAA
ATAACACTTAACCTCACATATTAATCACCAACCCCCACGCACTTTATTCC
ACCACACCCTACACATTTACCCCATCCTATTAACAATAAATCTCTCCCCC
TCCCCACCCCTCATAACATCAATTTTCCACCATACCTTTCCCCATTCCCC
ACTCCTCTACCCTATAATATTTTCATTACCCCCCCTCTCTTTATTTCCCC
CTCCCACCCCTCCACCCAATATAAACCCCATCATTCTTATTTGCCTCTCA
CTTATCTGCACCACTTCCCCAACCTCATACACCCCCTTCTCCCACATATT
AACCTCATATCTACCCTACCATATATATCCTCACTATN
TTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTGCCAAGTCCATTGAGGTCATGGGAGATGGT
TGCCTCAACGATGAACACTTGGAAGAACTGGGAGGAATTTTGAAGGCAAA
ACTTGAAGGGCACTTTAAAAACCAAGAGTTACGGCAAGTAAAAAGGCAAG
AAGAAAATTATGACCAACAGGTTGAAATGTCTCTTCAAGATGAGGATGAA
TGTGATGTTTATATTCTGACCAAAGTATCAGATATTTTGCACTCATTATT
TAGTACTTACAAGGAAAAAATTTTGCCATGGTTTGAGCAGCTACTCCCAC
TAATTGTAAATCTAATTTGTTCAAGTAGGCCATGGCCAGACAGACAATGG
GGACTATGCATATTTGATGACATCATAGAGCATTGCAGTCCAACCTCATT
CAAGTATGTTGAGTATTTTCGGTGGCCGATGCTTCTCAATATGCGAGACA
ACAACCCTGAAATCAGACAAGCTGCTGCTTATGGACTGGGAGTCATGGGC
CAGCTTGGTGGGAGATGACTACCGTTCCCTTGTGGTTCTAAACCGGTCCC
CTCTTTGTGAAAAAGTTATTAATGGGGCCATCTCCCCAACCCATATAAAG
GGGGGAGGTCACTAAGAAAATGTCCTCCCCCCCCCCACAAATATTTGGAG
TTTAGCCCCCTCTCGCGTATGTTTTTTTTACCCCCCCCTTCTCTTGCTTT
TTTCCCCTCCCTTTCCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_g17.g1 MSMg01no445_g17.g1 CHROMAT_FILE:
MSMg01no445_g17.g1 PHD_FILE: MSMg01no445_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:36 2005
         (399 letters)



>mm_chr19_29884503_29885301
          Length = 799

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgccaagtccattgaggtcatgggagatggttgcctcaacgatgaacacttggaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttttgccaagtccattgaggtcatgggagatggttgcctcaacgatgaacacttggaaga 540

                                                                       
Query: 61  actgggaggaattttgaaggcaaaacttgaagggcactttaaaaaccaagagttacggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 actgggaggaattttgaaggcaaaacttgaagggcactttaaaaaccaagagttacggca 480

                                                                       
Query: 121 agtaaaaaggcaagaagaaaattatgaccaacaggttgaaatgtctcttcaagatgagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agtaaaaaggcaagaagaaaattatgaccaacaggttgaaatgtctcttcaagatgagga 420

                                                                       
Query: 181 tgaatgtgatgtttatattctgaccaaagtatcagatattttgcactcattatttagtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgaatgtgatgtttatattctgaccaaagtatcagatattttgcactcattatttagtac 360

                                                                       
Query: 241 ttacaaggaaaaaattttgccatggtttgagcagctactcccactaattgtaaatctaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttacaaggaaaaaattttgccatggtttgagcagctactcccactaattgtaaatctaat 300

                                                                       
Query: 301 ttgttcaagtaggccatggccagacagacaatggggactatgcatatttgatgacatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttgttcaagtaggccatggccagacagacaatggggactatgcatatttgatgacatcat 240

                                                  
Query: 361 agagcattgcagtccaacctcattcaagtatgttgagta 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agagcattgcagtccaacctcattcaagtatgttgagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)