BAC Information

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BAC

Clone NameMSMg01-446C09
Chromosome19 (Build37)
Map Location 33,267,048 - 33,267,293
singlet/doubletsinglet
Overlap gene6530404N21Rik
Upstream geneSgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream geneLOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446C09.T7 (MSMg01no446_c09.b1)MSMg01-446C09.TJ (MSMg01no446_c09.g1)
ACCAG534912AG534913
length738888
length of high quality
(start - end)
247 (65 - 311)---
definitionCHROMAT_FILE: MSMg01no446_c09.b1 PHD_FILE: MSMg01no446_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:35 2005CHROMAT_FILE: MSMg01no446_c09.g1 PHD_FILE: MSMg01no446_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATC
TTATTACAAATAAGGCTCTTGTCCAGATGTGAGGGTTCCCATATTAATTC
AGCGGACAGGAAATTCTGCAAAGAAACTGATTTAAACATTCCTACCCAGT
TTTAGCCAAAATTGCCAAAAATGCCTGGGCTTTAATTTATGACTCCAGCC
CTCCATCCAGCAAAAAGAACCAAGGACGTAAAACAATTGCTCATATCAAG
ATCATTTTGAGACAGTAGGTTACAGCAAGGTTGCAGAGTAACTTACATAT
AAACAACTAATTATTATATATGCCTCAGGCTTATCTGTTATTTCTTCACC
TAAAAGAATCACTTGATATGTCATGACAAAAGCGTCTAAGCACTCTCTCA
CAATGTTTACACTGTGTATTGTGTAGATCCTTACAGGAATTTACACTTTT
TACAAGTCTCAGTGAACCAAACACAAATGGTACCTTTTACCTTCAGAATC
TTTCATTTGATCAGGTTTCATGAAATTATATTGTGAACTTTGGAATCCTC
AATCCTTTGCATAATGACTGCCACTATTAACACATTTTCTACTTCACTTG
TGCATATTTCCCCAATTGAATAATTTGAACACGCAATATATCACAAGCTC
TGATTTTGCTTATTTTACCCTAATCCCAAGCAACCTGTTTTCCCTCCGCC
GTGCATTATGTGTTTCGTTTCCCTTACGTCCCCCTTAN
CGCGAGCGCTGGGNGGNCGCCTGGATTCCTCAAAGGAGGNGANACNANAG
AAGGATATCAAAAAATTCCATATATTATTGTTGGCTTGTACACATTGTAC
AATGCATATACATATTGTGCCCGCACAACACTTATACACATNACAAAAAA
AGAAATAGATCTCTTTTTTTAAAAAAAAAAAGAAACACAATGTGCTCTCG
TTTTGCTTTCTGCACTTGGCAGGCATTAGTCGATTTTTGTAAGTGTTCAT
AAGCACACACCTTATTCTTTCTTATACAGTTTATTGTGCCAATGAAGTCC
ACTTTGACAAATACCAGCCATGAATCTATGCTAGGGTATTTTTTTTTTTC
TTTGCTCCCCATCTCATACCATAGACACCTGCAATCTTAATTGTTCACCT
CACACTCTGATAATGCCCTAAAGCCCCTATGCACGCCCGTTGCTGCAGAG
TTTTCTTCGCCCCACTATATTCCTAATGGCACCCCACCTATACAATTTTA
TACTCCTGACCTTTCGCGCCTCTGCCTCACTATCCTTAAAACTCCCCCCG
CCCCATGCATAAGTGATCGCATCATTGCCACCTGACCCGTCCGCCTGAAC
ACACCTTTACCTCTTGCTTTGCCCACATTCCCCCGTTCCTTTCACTCCCC
TTTTTTTTCCCCCACTTTCTCGACTCCCTCTATGCATTTTATATCCCACT
TTCCTTCCCCTTTACTCCAATTGCTACTCTCTAGGTTATCCCGCCTTGTC
ATCTCACCCCCTGCCGCCTTTATCGTTTTCCATCTTATCCGCCTCACTCC
TTTTCACACCCATTAGAACCTTACTCACCCCGCTTTGTCCCTCTCCCTAC
TCTCCCACTTATCTCTTTGTCTTATTCCACATTGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_c09.b1 MSMg01no446_c09.b1 CHROMAT_FILE:
MSMg01no446_c09.b1 PHD_FILE: MSMg01no446_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:35 2005
         (247 letters)



>mm_chr19_33266848_33267494
          Length = 647

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcttgtccagatgtgagggttcccatattaattcagcggacaggaaattctgcaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcttgtccagatgtgagggttcccatattaattcagcggacaggaaattctgcaaaga 260

                                                                       
Query: 61  aactgatttaaacattcctacccagttttagccaaaattgccaaaaatgcctgggcttta 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgatttaaacattcctacctagttttagccaaaattgccaaaaatgcctgggcttta 320

                                                                       
Query: 121 atttatgactccagccctccatccagcaaaaagaaccaaggacgtaaaacaattgctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 atttatgactccagccctccatccagcaaaaagaaccaaggacgtaaaacaattgctcag 380

                                                                       
Query: 181 atcaagatcattttgagacagtaggttacagcaaggttgcagagtaacttacatataaac 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 atcaagatcattttgagacagtaggttacagtaaggttgcagagtaacttacatataaac 440

                 
Query: 241 aactaa 246
           ||||||
Sbjct: 441 aactaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)