BAC Information

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BAC

Clone NameMSMg01-446J22
Chromosome19 (Build37)
Map Location 43,351,818 - 43,352,286
singlet/doubletsinglet
Overlap geneLOC545291
Upstream geneCrtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446J22.T7 (MSMg01no446_j22.b1)MSMg01-446J22.TJ (MSMg01no446_j22.g1)
ACCAG535271AG535272
length746761
length of high quality
(start - end)
526 (59 - 584)196 (135 - 330)
definitionCHROMAT_FILE: MSMg01no446_j22.b1 PHD_FILE: MSMg01no446_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:12 2005CHROMAT_FILE: MSMg01no446_j22.g1 PHD_FILE: MSMg01no446_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCAATACGACTCACTATATGCAGAGAATCCGCGGAATTCTGAAATGTTT
TCGAAATAAATAAACAGTATTACATTTTAAAAAATTATATTTGCAGTTAT
GAAATGCAACTAATGGAAATCTTTGCATTTATAAGATGCCTTAAATTTTA
CACTTAAATTGTTAGTTAAAACACTGAAATCAATAAAATAATTCAAGGAA
TATAAAGAAGAAATATATTAATATATAGTGAAGAAACATAACTGACAGGG
AATTGTGTGGGACAATGTTAATCAACAGAACAAACCTTCATAAATATGTA
AATAAACATTATTTTATGCACTCAGAACTTATCCTCAGTGAGGCAGCAAT
GTGGCTTTAGGTCCCTCCCTCCATAGCTCACTCTGGGAACACAGAGAGAA
CAAGTGTCACTGGGCTTTATTCTAGCTCCAGCCTGAAGCTCACCTGTCAA
TATGAATACAAAATGGAGAAATACTGAGTCAGAACTTCACAGTATTACAT
GAGGTAGACATCTAGCCTGAGTCCTAGATACTACACAAAGATGGACCTGG
TACCTGGGCTGCACAACTACAAGAAATCTCTCAGAGGTAAGGGTACGTGT
GTTCCGTCCCCAGAGTGACTGCAAGGAATCAGGCCTTCTCTGCTCTATAT
TGAATTTGCTATAGATGTTATATCCCCTGCCTAGACCTTTCTCCCTCATT
GTACCCTTCTCTCATTTGGTAGGGATCCTCAAGATCGTAAGTCCAC
NTTTTAACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGCCCAAACATTGTGAGAGATGAGATTT
ATTTAGGTTTTTAAAGTTTTAATCTTGTGCTCAGTTGACAAAATTTATTG
TCACTATCTATACACAAGGGTAAGAGACACAAACAACTGCATAGTACCAA
AGCATGCTATAAAAGGCGCAGGAATACCAACAGATTGGGAAGGGATCTTT
ACCAATCCTAAATCTGATAGGGGACTAATATCCAATATATACAAAGAACT
CAAGAAGATGGACTCCAGAAAAATCAAATATTTCTTTTTAAAAAATGGGG
TAAAGAGCTAAAGAAAGAATTCTCATCTGAGGAATACCTAATGGATGAGA
AGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATACAAAT
CAAAACAACCCTTAGATTTCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGTAAGGATGTGGTGAAAGAGGAACA
CTCCTCCATTGCTGGTGGCACTGCAAGCTGGTACAACCACTCTGCATATC
ACCCTGGTGTTTTCTTACACAACTTGGATATAGCCTTCCTACCCCCTTTT
CCTATCGTACACCATATTTTTTTTTTTTTACCCCCCAACCTATCACGGAA
CCCTTCAATGTTGGCATCTCTCATAATTCCCACCTACCCCTTTCCTCATA
TGTCTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_j22.b1 MSMg01no446_j22.b1 CHROMAT_FILE:
MSMg01no446_j22.b1 PHD_FILE: MSMg01no446_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:12 2005
         (526 letters)



>mm_chr19_43351618_43352540
          Length = 923

 Score =  812 bits (420), Expect = 0.0
 Identities = 459/476 (96%), Gaps = 11/476 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaacagtattacattttaaaaaattatatttgcagttatgaaatgcaactaatggaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aataaacagtattaca-tttaaaaaattatatttgcagttatgaaatgcaactaatggaa 611

                                                                       
Query: 61  atctttgcatttataagatgccttaaattttacacttaaattgttagttaaaacactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atctttgcatttataagatgccttaaattttacacttaaattgttagttaaaacactgaa 551

                                                                       
Query: 121 atcaataaaataattcaaggaatataaagaagaaatatattaatatatagtgaagaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atcaataaaataattcaaggaatataaagaagaaatatattaatatatagtgaagaaaca 491

                                                                       
Query: 181 taactgacagggaattgtgtgggacaatgttaatcaacagaacaaaccttcataaatatg 240
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 490 tagctgacagggaattgtgtgggacaatgttaatccacagaacaaaccttcataaatatg 431

                                                                       
Query: 241 taaataaacattatttta----tgcactcagaacttatcctcagtgaggcagcaatgtgg 296
           |||||||||||||    |     |||||||| ||||||||||||||||||||||||||||
Sbjct: 430 taaataaacatta----aagagcgcactcaggacttatcctcagtgaggcagcaatgtgg 375

                                                                       
Query: 297 ctttaggtccctccctccatagctcactctgggaacacagagagaacaagtgtcactggg 356
           |||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cttt-gggccc-ccctccatagctcactctgggaacacagagagaacaagtgtcactggg 317

                                                                       
Query: 357 ctttattctagctccagcctgaagctcacctgtcaatatgaatacaaaatggagaaatac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctttattctagctccagcctgaagctcacctgtcaatatgaatacaaaatggagaaatac 257

                                                                   
Query: 417 tgagtcagaacttcacagtattacatgaggtagacatctagcctgagtcctagata 472
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgagttagaacttcacagtattacatgaggtagacatctagcctgagtcctagata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 923
Length adjustment: 10
Effective length of query: 516
Effective length of database: 913
Effective search space:   471108
Effective search space used:   471108
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)