Query= MSMg01no448_h15.b1 MSMg01no448_h15.b1 CHROMAT_FILE:
MSMg01no448_h15.b1 PHD_FILE: MSMg01no448_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:46 2005
(249 letters)
>mm_chr19_41574946_41575594
Length = 649
Score = 447 bits (231), Expect = e-130
Identities = 245/253 (96%), Gaps = 6/253 (2%)
Strand = Plus / Plus
Query: 1 ccttgccacatagaaccagttcctctgaccaataaaaaacttgagatgagaactgcctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgccacatagaaccagttcctctgaccaataaaaaacttgagatgagaactgcctac 260
Query: 61 attaactctatatctttcattctataagttgagcagtcggtagctacctcttgtgtatct 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaactctgtatctttcattctataagttgagcagtcggtagctacctcttgtgtatct 320
Query: 121 gtgccttgataagcagccataactgagagtgcatatagaagatttagatgtgaactctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgccttgataagcagccataactgagagtgcatatagaagatttagatgtgaactctgc 380
Query: 181 aggtgtgtgtgtgtgtgtgtgtgtc------acactgttactgcactgagtgtaaaacat 234
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aggtgtgtgtgtgtgtgtgtgtgtgtgtgtgacactgttactgcactgagtgtaaaacat 440
Query: 235 tgctgtgcatgca 247
|||||||||||||
Sbjct: 441 tgctgtgcatgca 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no448_h15.g1 MSMg01no448_h15.g1 CHROMAT_FILE:
MSMg01no448_h15.g1 PHD_FILE: MSMg01no448_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:46 2005
(438 letters)
>mm_chr19_41697309_41698147
Length = 839
Score = 592 bits (306), Expect = e-173
Identities = 327/334 (97%), Gaps = 1/334 (0%)
Strand = Plus / Minus
Query: 106 atacaaacaatcataggcacaccacacacgaacaaaaagggaattaatgtctcaaagtac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 atacaaacaatcataggcacaccacacacgaacaaaaagggaattaatgtctcaaagtac 780
Query: 166 agagtttgaagtgatgcaaacactttggaaatgagtaatggagatggtcacctggggatg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 agagtttgaagtgatgcaaacactttggaaatgagtaatggagatggtcacctggggatg 720
Query: 226 ggaatacagttagcatttctgtcttgcacaccgaatgtgttaaaaagtgaccaagagtgt 285
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ggaatacagttagcatttctgacttgcacaccgaatgtgttaaaaagtgaccaagagtgt 660
Query: 286 atttttatgtattatatataaaacattgaaggaatagataagcctggggctgagga-ggt 344
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 659 atttttatgtattatatataaaacaatgaaggaatagataagcctggggctgaggagggt 600
Query: 345 tgtcctcaccctagagattgggtgagtgcagaaaaggcaccttcctggagtttcttggta 404
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 599 tgtcctcaccctagagattgggtgagtgcagaaaaggcatcttcctggcgtttcctggta 540
Query: 405 gctttggctgtggcatgcacatggactgtgaatg 438
|| |||||||||||||||||||||||||||||||
Sbjct: 539 gcgttggctgtggcatgcacatggactgtgaatg 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space: 356070
Effective search space used: 356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
