Query= MSMg01no448_n10.b1 MSMg01no448_n10.b1 CHROMAT_FILE:
MSMg01no448_n10.b1 PHD_FILE: MSMg01no448_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:15 2005
(225 letters)
>mm_chr19_44361941_44362563
Length = 623
Score = 344 bits (178), Expect = 2e-99
Identities = 208/222 (93%), Gaps = 8/222 (3%)
Strand = Plus / Plus
Query: 4 gaattccatttttgttctcgcaccttggaagactgaaatgtaatgttaaaacaaccaccg 63
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccatttttgaccttgcaccttggaagactgaaatgtaatgttaaaacaaccaccg 263
Query: 64 ctgtggtgaccaccattggtgcaagcatttgggaaggaacctgcacactgcattttctcc 123
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgtggtgaccaccatcggcgcaagcatttgggaaggaacctgcacactgcattttctcc 323
Query: 124 agcctctcagtggcttcaccattgcacaactatctccgttttggatctgagcactgcttc 183
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcctctcagtggcttcaccatcgcacaactatctccgttttggatctgagcactgcttc 383
Query: 184 cccggtcccccccccccccccctcgcttttccacacacttca 225
|||| |||||||||||| ||||||||||||||||||
Sbjct: 384 cccg-------ccccccccccct-gcttttccacacacttca 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 623
Length adjustment: 9
Effective length of query: 216
Effective length of database: 614
Effective search space: 132624
Effective search space used: 132624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no448_n10.g1 MSMg01no448_n10.g1 CHROMAT_FILE:
MSMg01no448_n10.g1 PHD_FILE: MSMg01no448_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:15 2005
(389 letters)
>mm_chr19_44548790_44549578
Length = 789
Score = 752 bits (389), Expect = 0.0
Identities = 389/389 (100%)
Strand = Plus / Minus
Query: 1 tgttcattgttactgaactaagaaaagggagttcacggagtcccacaagggccaagcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgttcattgttactgaactaagaaaagggagttcacggagtcccacaagggccaagcccc 530
Query: 61 ttaagattgcctctgctctcttatttctttgtaaaccacacaacaacaacatctggtgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttaagattgcctctgctctcttatttctttgtaaaccacacaacaacaacatctggtgag 470
Query: 121 atctgagggaatggtgaccgaatgtctccccacatttaggagtcagactttcctgggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atctgagggaatggtgaccgaatgtctccccacatttaggagtcagactttcctgggaag 410
Query: 181 caatctggaagtctgtaagagatttcccttggcgattgtgttggaagccaggtttgggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 caatctggaagtctgtaagagatttcccttggcgattgtgttggaagccaggtttgggaa 350
Query: 241 cttttggaagcatcccaagaaaggggtgttgagagttggggtggctttcctcatggaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cttttggaagcatcccaagaaaggggtgttgagagttggggtggctttcctcatggaaag 290
Query: 301 gaccagatgaggaggattctaaggaaagccagtggacataaatagcctgccagcttcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaccagatgaggaggattctaaggaaagccagtggacataaatagcctgccagcttcttt 230
Query: 361 ctgtgatctcccccttttcctacctccct 389
|||||||||||||||||||||||||||||
Sbjct: 229 ctgtgatctcccccttttcctacctccct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
