BAC Information

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BAC

Clone NameMSMg01-449E19
Chromosome19 (Build37)
Map Location 45,935,776 - 46,080,560
singlet/doubletdoublet
Overlap gene9130011E15Rik, EG627939, 4930505N22Rik, Hps6
Upstream geneLOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2
Downstream geneLdb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449E19.T7 (MSMg01no449_e19.b1)MSMg01-449E19.TJ (MSMg01no449_e19.g1)
ACCAG537306AG537307
length764762
length of high quality
(start - end)		538 (76 - 613)235 (338 - 572)
definitionCHROMAT_FILE: MSMg01no449_e19.b1 PHD_FILE: MSMg01no449_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:53 2005CHROMAT_FILE: MSMg01no449_e19.g1 PHD_FILE: MSMg01no449_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,935,776 - 45,936,313)(46,080,326 - 46,080,560)
sequence
NNNNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCANAGAACCTTCCGACTGAGGGGAACGGGGAAAGAAAAATC
TTGTCACTTTTAAGATTTCTACATTAGGTCCTGAACAGCAAACAGCACCA
TGAGTTGAGACAACCTGGAGAAGAAAAAGACCCTTACTTTGTGAAGCTGA
CAACTACTCTTTGTAAGGTCATGTGGAAGGCCTGTGAGTCACATTAGGCA
GCTTATGAAGTTAACGAGGCAAGGCCATGCTAGTAGTAAAGACCTGGAAG
CTTGCTCAGCCGGGGAGCTACAAAGAATCTTGTGTGTGGACACAGTCAGC
TAAGGACATAACACAAAGAATGGCACTCTCCTAGTTAACATTAGTCTCTC
CACTTCAGGTTCGGGGGAAATCAGCTGAACACCCCATGATACCAGCTATC
TTTCTAACTTTGAACTATTTCTGAATGTTACTCTCTGCCTGTCTAGACTA
ATACCTCCTACTTGAGATAAAATAGGAAGGGATGAAAGAAGACAGGTTCA
TGTCCTAGACCTTAGAGATACCAAGTTGTGCTTCAAACGCCTAGCAAAGG
GAGAAGCGATGGCATCCAGCTCAGCAAGGAGACGGGCTGTTTTCTTTCCA
TGTACCTGATCATAGACAGACTTACATTCCCACACTCTGACTTTTGGCCC
CTGCTTTTCTACAGCCATAGAATAAAGGGTTTCTTTTCTTCTTTCCTTCT
TCCCTTCCTCCCTC

NNNNNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCAGAGAATTCTATAAAGATCAACAGGTTT
CCTAGCACACAGGAAACACACTTGTGTATACTGTTTCCATGACCAGAAGT
AGCTGATTTATGCAAGACATCCAGATTCAACCATTCCCTCGATAAGCTAC
AACCCTTAGCTGTTCAAAACTTAACACGCACAAGAAACCTCTGTGAGTAT
ATTTGGTATTTGTATGTATTTTAAAAATTGTTCCACAACAGACAGTATTG
CACACACAAGTCCCACCTTCGTGCTTCGTAACTCNAGGTACCCTTCCCTT
CGCATCTCTGTGCTCTACAAATGAACTCCCACATCAGCTGCACCGAGCCC
TTGTCCAGGTGGTACCCAGGCTTCTTGTCCTGGATGGTCTGATGCCGGGA
GAGAAGCAGTGGGTCCACGAGGTGGTGTAGGGGGTGGAGTGCCTGGGTCC
CATAAGATGTCCTCATAGGTGCTTTGAACTGGGCCAGATGGTCTTCCTTG
AGCCCCAGTCTGTTCTAGCAGGGCTCTGACCAAGTCCACTGTGAGAGGGG
GCTCTGCCCCAGGCTCAGGGTAAGGGGTGGTTCTCCCTTCATCTGGGAAA
TGAGTCCCTCACCCGAAGTTTTTTTTTTTTGTTTTTACCCCACCGGAGGG
GCCCCGCTCTACATAATAATTAACTCGGTTATTTTTGCATGTGCTGCGCG
TTACAACCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_e19.b1 MSMg01no449_e19.b1 CHROMAT_FILE:
MSMg01no449_e19.b1 PHD_FILE: MSMg01no449_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:53 2005
         (538 letters)



>mm_chr19_45935576_45936513
          Length = 938

 Score =  994 bits (514), Expect = 0.0
 Identities = 532/538 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggggaacggggaaagaaaaatcttgtcacttttaagatttctacattaggtcctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggggaacggggaaagaaaaatcttgtcacttttaagatttctacattaggtcctgaa 260

                                                                       
Query: 61  cagcaaacagcaccatgagttgagacaacctggagaagaaaaagacccttactttgtgaa 120
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tagcaaacagcaccatgagttgagacaacctggagaaggaaaagacccttactttgtgaa 320

                                                                       
Query: 121 gctgacaactactctttgtaaggtcatgtggaaggcctgtgagtcacattaggcagctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgacaactactctttgtaaggtcatgtggaaggcctgtgagtcacattaggcagctta 380

                                                                       
Query: 181 tgaagttaacgaggcaaggccatgctagtagtaaagacctggaagcttgctcagccgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagttaacgaggcaaggccatgctagtagtaaagacctggaagcttgctcagccgggg 440

                                                                       
Query: 241 agctacaaagaatcttgtgtgtggacacagtcagctaaggacataacacaaagaatggca 300
           ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 agctacaaagaatcaagtgtgtggacacagtcagctaaggacataatacaaagaatggca 500

                                                                       
Query: 301 ctctcctagttaacattagtctctccacttcaggttcgggggaaatcagctgaacacccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctcctagttaacattagtctctccacttcaggttcgggggaaatcagctgaacacccc 560

                                                                       
Query: 361 atgataccagctatctttctaactttgaactatttctgaatgttactctctgcctgtcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgataccagctatctttctaactttgaactatttctgaatgttactctctgcctgtcta 620

                                                                       
Query: 421 gactaatacctcctacttgagataaaataggaagggatgaaagaagacaggttcatgtcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gactaatacctcctacttgagataaaataggaagggatgaaagaagacaggttcatgtcc 680

                                                                     
Query: 481 tagaccttagagataccaagttgtgcttcaaacgcctagcaaagggagaagcgatggc 538
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 tagaccttagagataccaagttgtgcttcaaacacctagcaaagggagaagcgatggc 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no449_e19.g1 MSMg01no449_e19.g1 CHROMAT_FILE:
MSMg01no449_e19.g1 PHD_FILE: MSMg01no449_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:53 2005
         (235 letters)



>mm_chr19_46080126_46080760
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtacccttcccttcgcatctctgtgctctacaaatgaactcccacatcagctgcaccgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtacccttcccttcgcatctctgtgctctacaaatgaactcccacatcagctgcaccgag 376

                                                                       
Query: 61  cccttgtccaggtggtacccaggcttcttgtcctggatggtctgatgccgggagagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cccttgtccaggtggtacccaggcttcttgtcctggatggtctgatgccgggagagaagc 316

                                                                       
Query: 121 agtgggtccacgaggtggtgtagggggtggagtgcctgggtcccataagatgtcctcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agtgggtccacgaggtggtgtagggggtggagtgcctgggtcccataagatgtcctcata 256

                                                                  
Query: 181 ggtgctttgaactgggccagatggtcttccttgagccccagtctgttctagcagg 235
           ||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 255 ggtgctttgaactgggccagacggccttccttgagccccagtctgttctagcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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