BAC Information

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BAC

Clone NameMSMg01-449H02
Chromosome19 (Build37)
Map Location 7,569,302 - 7,569,711
singlet/doubletsinglet
Overlap gene5730596K20Rik
Upstream geneLOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547
Downstream geneHrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449H02.T7 (MSMg01no449_h02.b1)MSMg01-449H02.TJ (MSMg01no449_h02.g1)
ACCAG537413AG537414
length746762
length of high quality
(start - end)		597 (51 - 647)419 (82 - 500)
definitionCHROMAT_FILE: MSMg01no449_h02.b1 PHD_FILE: MSMg01no449_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:04 2005CHROMAT_FILE: MSMg01no449_h02.g1 PHD_FILE: MSMg01no449_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGATGCATACCAAATGGCTGAGAAGCACCTGAAAA
AATGTTCAGCATTCTTAATCATCAGGGAAATGCAAATCAAAATAACCCTG
AGTTTGCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGAAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTAGCGGTTC
CTCAGAAAATTGGACGTGGTACTACTGGAGGATCCTGCAATTCCTCTCCT
GGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTTCA
CTATGTTCATAGCAGCCTTATTTATAATAGACAGAAACTGGAAAGAACCC
AGCTGTACCTCAACAGAGGAATGGTTACAGAAATTGTGGTACATTTACAC
AATGAAGCACTACACAGCTATTAAAAACAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGTGTTAACCCAATCA
CAAAAGAACTCACATGATATGTACTCAATGATAAGTGGATATTAGCCCAG
AAACTTAGAATACCCAAGATACAAGATACAAGTTGCAAAACACTTGAAAC
TCAAGAAGACAAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGA

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCCGGGGCTCCTGGAG
CGGGGAACGTTCCCAGTCTCCGCCGGGAGCCCGCGGCCTCCTGCGGCCTG
GTGTTCTGGCCCGTCGAGCTCCGCCCTGTGCTGGGCAGGGCGTGCCGGGC
GGTGGCGCGCTCCGGGTCGGGAAGCGAGGTTGGCGGTCCGTCTTAACGGG
CCGGGATCGGCGGAAGGCTTTATTGTTGAGCCTTAAAGTGCTGGAATGCT
GCGGTGCAGCCTTGGAGTTGAAAGGTTTTATTTTAAACGAAAAGACCTTG
AGATACTGACAAGTATTAGTAAAGTTCGTTTTCCACCCGCGCTTATCTCC
ATGTTTGGTGATAAAAGAATTGGCCTAAATTTGGTTGTTTTGTTTTGCAA
GTTTTTTGTTTTTGTTTTTTTTTTTTTTTTGTTTTTAAAGTAAGTTTGGT
TCCTTTGTCTTTGCCGGAGACATAAAATGAGGTGGTAAAAGTACTAATTG
AAAACCTTATAGTCCCTCCGTAAATTCATGGATGCAGTTTCGCCTGTCTT
TTTACCTGGCACTGTGCTTGTTTTATGGGTATGGCCCCGAAATGATTGCT
CTTTTTCATTTGCCATATCTTTTGGATCTCTAACTTCAATTTATTCTTCC
TTTGGTTCTTTCATAATTTTTTTCTATAATCCTACTTTTTCAACCTTTTG
TTTCTATTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_h02.g1 MSMg01no449_h02.g1 CHROMAT_FILE:
MSMg01no449_h02.g1 PHD_FILE: MSMg01no449_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:04 2005
         (419 letters)



>mm_chr19_7569102_7569920
          Length = 819

 Score =  768 bits (397), Expect = 0.0
 Identities = 410/419 (97%), Gaps = 9/419 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggccggggctcctggagcggggaacgttcccagtctccgccgggagcccgcggcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggccggggctcctggagcggggaacgttcccagtctccgccgggagcccgcggcctcc 260

                                                                       
Query: 61  tgcggcctggtgttctggcccgtcgagctccgccctgtgctgggcagggcgtgccgggcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcggcctggtgttctggcccgtcgagctccgccctgtgctgggcagggcgtgccgggcg 320

                                                                       
Query: 121 gtggcgcgctccgggtcgggaagcgaggttggcggtccgtcttaacgggccgggatcggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggcgcgctccgggtcgggaagcgaggttggcggtccgtcttaacgggccgggatcggc 380

                                                                       
Query: 181 ggaaggctttattgttgagccttaaagtgctggaatgctgcggtgcagccttggagttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaggctttattgttgagccttaaagtgctggaatgctgcggtgcagccttggagttga 440

                                                                       
Query: 241 aaggttttattttaaacgaaaagaccttgagatactgacaagtattagtaaagttcgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggttttattttaaacgaaaagaccttgagatactgacaagtattagtaaagttcgttt 500

                                                                       
Query: 301 tccacccgcgcttatctccatgtttggtgataaaagaattggcctaaatttggttgtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccacccgcgcttatctccatgtttggtgataaaagaattggcctaaatttggttgtttt 560

                                                                      
Query: 361 gttttgcaagttttttgtttttgttttttttttttttttgtttttaaagtaagtttggt 419
           ||||||||||||||||||||| |||||||||||||||        ||||||||||||||
Sbjct: 561 gttttgcaagttttttgtttt-gtttttttttttttt--------aaagtaagtttggt 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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