Query= MSMg01no450_h14.b1 MSMg01no450_h14.b1 CHROMAT_FILE:
MSMg01no450_h14.b1 PHD_FILE: MSMg01no450_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:24 2005
(532 letters)
>mm_chr19_12003968_12004899
Length = 932
Score = 978 bits (506), Expect = 0.0
Identities = 527/536 (98%), Gaps = 4/536 (0%)
Strand = Plus / Minus
Query: 1 caatagaaagtctacaagtattcaactttaccattacataagtgattattattagcacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caatagaaagtctacaagtattcaactttaccattacataagtgattattattagcacaa 617
Query: 61 gcagagaaactgttctctaagctagcctggctattcacctggtaatagaaatcatccagg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcagacaaactgttctctaagctagcctggctattcacctggtaatagaaatcatccagg 557
Query: 121 tagggatcagtgctctgcagctgcatcatctgtattttagagacccaatccttctcccgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tagggatcagtgctctgcagctgcatcatctgtattttagagacccaatccttctcccgc 497
Query: 181 tgcaacattagattagcatatgggtccttccggagatgatcttgatgactggaccggtgc 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 496 tgcaacattagattagcatatggatccttccggagatgatcttgatgactggactggtgc 437
Query: 241 cctcctctatctccagtaccattgagattccgatgctgactgaaaggcaaagacatgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctcctctatctccagtaccattgagattccgatgctgactgaaaggcaaagacatgctg 377
Query: 301 cattcaggccaagtcagcatattagtcatgctttttgaaatataagaatacaacaggctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cattcaggccaagtcagcatattagtcatgctttttgaaatataagaatacaacaggctg 317
Query: 361 gttccccctttgatttttgtgaaggaaaacagaactgcaccctaacagactgaaagagct 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 316 gttccccctttgatttttgtgaaggaaaacggaactgcaccctaacagactgaaagagct 257
Query: 421 gtgtgacacataatcacagaaataaaactaagatctgagtcctttccccaccaat----a 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 256 atgtgacacataatcacagaaataaaactaagatctgagtcctttccccaccaataagca 197
Query: 477 catctgtaccggctgattttgtgttgacacaaactagagtcatcagagaggaagga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 catctgtaccggctgattttgtgttgacacaaactagagtcatcagagaggaagga 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_h14.g1 MSMg01no450_h14.g1 CHROMAT_FILE:
MSMg01no450_h14.g1 PHD_FILE: MSMg01no450_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:25 2005
(476 letters)
>mm_chr19_11839841_11840716
Length = 876
Score = 843 bits (436), Expect = 0.0
Identities = 466/476 (97%)
Strand = Plus / Plus
Query: 1 tatgagcgcctgcctgagctgaggcaggttgtggatcatcagatcaacagtggcttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgagcgcctgcctgagctgaggcaggttgtggatcatcagatcaacagtggcttcttt 260
Query: 61 tctcccaaagatccagactgcttcaaggacgtggttaacatgctgatgtaccattcaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcccaaagatccagactgcttcaaggacgtggttaacatgctgatgtaccattcaagg 320
Query: 121 tacttgcagactatgaagcctacatccaataccaggcccaggtggaccatctataccgca 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tacttgcagactatgaagcctacatccaatgccaggcccaggtggaccatctataccgca 380
Query: 181 attccaagtagtggacaaaaaaggtgatcaggaatataggctgctctggcaagttctcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attccaagtagtggacaaaaaaggtgatcaggaatataggctgctctggcaagttctcca 440
Query: 241 gtgacctattcatcactgaatacacccaggagatctggggtatagagccctctgacctgc 300
|||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaccgaaccatcactgaatacacccgggagatctggggtatagagccctctgacctgc 500
Query: 301 ctatcccaccccccaacctccccaaggactaattaattatcccacacagtgagaccagtg 360
||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 501 ctaccccactccccaacctccccaaggactaattaattaactcacacagtgagactagtg 560
Query: 361 gcttgtttagctgactgtacccttgccagtcttcaggcactgcaagcaactgctggtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttgtttagctgactgtacccttgccagtcttcaggcactgcaagcaactgctggtccc 620
Query: 421 tgctatccaaagtgctatgtgtccagggaggatcatgggaatggttttgaggacct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctatccaaagtgctatgtgtccagggaggatcatgggaatggttttgaggacct 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
