BAC Information

Click to search

BAC

Clone NameMSMg01-450J21
Chromosome19 (Build37)
Map Location 9,614,084 - 9,614,319
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143
Downstream geneLOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450J21.T7 (MSMg01no450_j21.b1)MSMg01-450J21.TJ (MSMg01no450_j21.g1)
ACCAG538303AG538304
length746766
length of high quality
(start - end)
555 (77 - 631)243 (76 - 318)
definitionCHROMAT_FILE: MSMg01no450_j21.b1 PHD_FILE: MSMg01no450_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:36 2005CHROMAT_FILE: MSMg01no450_j21.g1 PHD_FILE: MSMg01no450_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:36 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTACTGTTCCTTAGCTAAATTAACACGGCCCTAAACTGCTTTC
TAAATGTTTATTATGTTCATATCCATAGACACATTTTAACCCCAGCTTTG
TTGGAGAAGCTTCCCTTTGCAGTGAATAATGGTGAGTACAGCTGCTCAGA
GTGCTGAGGAAAAAGTGCCAGTTGAATTCATATCCCAAACCAGGACATTT
ACACACCCTCTTCATGGCAGGAAACAAGAGAAAGAGGGGATATAAAGAAT
ATGACAGTTGGAATATAGGGACATGATATCTAGGCATGACTCAACCATTT
CAATCATAATCTCATAGGTTTGTTGGCCCACACAGGACTTGAACAAGATT
GTTTATCACAGTCAATCATGTATTGGGGCAGGGCTCACAGGACCCTTACA
AACTGTTAGATACTGATGAATTCTGGAGGAAGTACAGTTAATTATGTATC
CACTGGTGAATCTACCGAACTTCAATGGATATCTCTAAACTCAGAAACTA
CTGGATGAAAAATTCCAGGATCACACTACAAAACCAGAGTCACATAGATG
ATCCTAGTTACACTCAGTGGATCCCAAAACAAAACAAAGAGGCAAGAATG
CAAGAAATGTATCTATGGAGGACAGGGAGGGGGCTGAGACACAGTTGAAG
GATGAGGTAAGAGAGTATGGGGTGATGTTAATCAAGATCATTCTAA
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGACTCAGAGAGGATATTGGG
ACAGTCACAAGCAGCATTCATCAAACAGATTGTAAATCAAGAGGGAGAGA
AATGAGGGGAAATTAGAGAAAAAAGGAAGTGGGCTTTAAAGAATTTTTCC
AAGCTATTCTCTCATCTTTTAAAATGCAATTTTAATCTAAAATCTAAATA
AACATAACACTGCTTACCTTAGCTTCTATTCTTATCATTCTACTAGCCTG
TCAATAGGTGACTCACAATTGAATACTTCTTATTTGAGAACAGTCTTGCT
TAGACTATTTTACAAAGTCTTAAAATAGCATATCTTAAACGTTTAATTTA
GATATGTTTTTTTTTGTTTTTTTGTTTTTTGGGATATCGCCCACTGCTCC
AACTGGTCAGCTACAGGGGACTCAGCCTCTATGGTATGTAAAATACACTT
TGTTAGACTACCCCAGCAGATTCCAGTAAGGCCACGCAATAAATTATCTT
GTGCTATGGATTTATTCTGTGGGATCCGTTCCTCTGGAAATCTCCTCTAA
TACCGTTCATGACCCATTACCTGCAAGGGATGATTGATAGCTCACAATAT
CTATTATCCCCCTCCCTTATTTTCTCCCATTTCCTTGCCCCAACGATATG
GCTCTCCTCAGCCCTATTTTTTACCACTTTTCGCCCTATCTTACCTCGAA
CCTCCCGCATTGTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_j21.g1 MSMg01no450_j21.g1 CHROMAT_FILE:
MSMg01no450_j21.g1 PHD_FILE: MSMg01no450_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:36 2005
         (243 letters)



>mm_chr19_9613884_9614526
          Length = 643

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagactcagagaggatattgggacagtcacaagcagcattcatcaaacagattgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagactcagagaggatattgggacagtcacaagcagcattcatcaaacagattgtaa 260

                                                                       
Query: 61  atcaagagggagagaaatgaggggaaattagagaaaaaaggaagtgggctttaaagaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaagagggagagaaatgaggggaaattagagaaaaaaggaagtgggctttaaagaatt 320

                                                                       
Query: 121 tttccaagctattctctcatcttttaaaatgcaattttaatctaaaatctaaataaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccaagctattctctcatcttttaaaatgcaattttaatctaaaatctaaataaacat 380

                                                                   
Query: 181 aacactgcttaccttagcttctattcttatcattctactagcctgtcaataggtga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacactgcttaccttagcttctattcttatcattctactagcctgtcaataggtga 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)