Query= MSMg01no452_p01.b1 MSMg01no452_p01.b1 CHROMAT_FILE:
MSMg01no452_p01.b1 PHD_FILE: MSMg01no452_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:39 2005
(612 letters)
>mm_chr19_17143177_17144188
Length = 1012
Score = 1075 bits (556), Expect = 0.0
Identities = 595/608 (97%)
Strand = Plus / Minus
Query: 5 gaattcagtcaccaattgtctcatggagcaagtgataatctcctgcatgttggccagtgt 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattcagtcaccaattgtctcatggagcaagtgataatctcctgcatgttggccagtgc 753
Query: 65 tttcaggcttacagaccattctgtggcttttaaggagttgcaggttagtgaacagaaata 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 752 tttcaggcttacagaccattctgtggcttttaaggagttgcaggttagcgaacagaaata 693
Query: 125 gtaagtcaataaatcagtttaaagaggatttctaacactgacaagtgccagccagaataa 184
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 692 gtaagtcaataaatcagtttaaagaggattgctaacactgacaggtgccagccagaataa 633
Query: 185 actctctgatgagaaagaacacaaagcagaagggaggtcagagtgggaagtctggggcat 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 actctgtgatgagaaagaacacaaagcagaagggaggtcagagtgggaagtctggggcat 573
Query: 245 tgataaggttacatttcatgcattcctgtataaagggagataatgagctttgtcatattc 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 572 tgataaggttacatttcatgcattcctgtataaagggagataatgcgctttgtcatattc 513
Query: 305 tgacctcaaagtaaactggagaaaagaataagcttgcatgaagaacccaggactgccaaa 364
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct: 512 tgacctcaaagtaaactggagaaaagaataagcttgaatgaagaaccgaggaccgccaaa 453
Query: 365 ggttggtgcaggagcagaggaacgagatgaggttgcgtgcagcaggaccacatgatacaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 452 ggttggtgcaggagcagaggaacgagatgaggttgcgtgcagcaggaccacgtgatacaa 393
Query: 425 agcttgaggagaatgggggtgaattttggttttcctcataggcaatgagacctaagtcaa 484
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 392 agcttgaggagaatgggggtgaattttggttttcctcataggcaatgaggcctaagtcaa 333
Query: 485 gaatttgaagcaaagacatagatacacaattcacatttggtgtttcccaaagattacaga 544
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggatttgaagcaaagacgtagatacacaattcacatttggtgtttcccaaagattacaga 273
Query: 545 catgttgggtagagactggatgacaagagggaaaagcaaagaagcccttgagggtaggag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 catgttgggtagagactggatgacaagagggaaaagcaaagaagcccttgagggtaggag 213
Query: 605 agtactca 612
||||||||
Sbjct: 212 agtactca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_p01.g1 MSMg01no452_p01.g1 CHROMAT_FILE:
MSMg01no452_p01.g1 PHD_FILE: MSMg01no452_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:39 2005
(620 letters)
>mm_chr19_16970567_16971586
Length = 1020
Score = 1081 bits (559), Expect = 0.0
Identities = 606/627 (96%), Gaps = 13/627 (2%)
Strand = Plus / Plus
Query: 1 tgtgtcagcgttcactatgtgtgtgtttagggttacaatgtcttcccagttaattgttct 60
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tgtgtcagcgttcgctatgtgtgtgtttagggttataatgtcttcccagttaattgttct 260
Query: 61 ataattagagtgaagccgccgtcttctgatttgctttcttttgaagttcatttgtcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataattagagtgaagccgccgtcttctgatttgctttcttttgaagttcatttgtcagat 320
Query: 121 actaggctgacacctgcttacttctttgtcccgtttgtttggaatacctttccccatctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaggctgacacctgcttacttctttgtcccgtttgtttggaatacctttccccatctt 380
Query: 181 ctttgaaggtaaaatgtgttgcttgaagacaacagaaagatggaccttgtttcttaatcc 240
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 381 ctttgaaggtaaaatgtgttgcttgaagacaacagaaagatggattttatttcttaatcc 440
Query: 241 attctctaagctgtgcctttttgttcaggaccagagaccaggcgtatttaaagctggcca 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 attctctaagctgtgcctttttgttcaggaccagagaccaggcatatttaaagctggcca 500
Query: 301 ttgactgttgctagtttggtttttgctacttgtgttcttca---ccctgttttgtgtttc 357
||||||| |||||||||||||||||||||| |||||||| | | |||||||||||||
Sbjct: 501 ttgactgctgctagtttggtttttgctactcgtgttctt-agttc--tgttttgtgtttc 557
Query: 358 agtgattattgattctctcctcctcttgtttctcgatttaaagactatttccggtatgct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agtgattattgattctctcctcctcttgtttctcgatttaaagactatttccggtatgct 617
Query: 418 ctgcagagctggtttggtggacaaaaatccttttagcctgtttataacataaaaagtctt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgcagagctggtttggtggacaaaaatccttttagcctgtttataacataaaaagtctt 677
Query: 478 ttttttt----ccccttaactgtggcagataatttttctgggtacagcattaggctggaa 533
||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttttttttttc---ttaactgtggcagataatttttctgggtacagcattaggctggaa 734
Query: 534 tctgatctttcagaacttgaagtgtattgctctagggtctgatggaatttaactttccac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tctgatctttcagaacttgaagtgtattgctctagggtctgatggaatttaactttccac 794
Query: 594 tgaggagtcagctgccgttctgttagg 620
|||||||||||||||||||||||||||
Sbjct: 795 tgaggagtcagctgccgttctgttagg 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
