Query= MSMg01no453_f09.b1 MSMg01no453_f09.b1 CHROMAT_FILE:
MSMg01no453_f09.b1 PHD_FILE: MSMg01no453_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:11 2005
(655 letters)
>mm_chr19_21448625_21449679
Length = 1055
Score = 1172 bits (606), Expect = 0.0
Identities = 643/656 (98%), Gaps = 4/656 (0%)
Strand = Plus / Plus
Query: 1 ttctcagttcttccagagtaacctgcttcagtagattacaagcagctccacagggccggt 60
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcagttcctgcagagtaacctgcttcagtagattacaagcagctccacagggccggt 260
Query: 61 tgtctgtgcctgtgcctgtgcttgcaggccatttcaatacaatgtaaaagcaattacaag 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tgtctgtgcctgtgcctgtgcttgcaggccatttcaatacagtgtaaaagcaattacaag 320
Query: 121 aatatttttgtgtttgcatatagaataaagtctccagagctaaactgtagagtcagagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatttttgtgtttgcatatagaataaagtctccagagctaaactgtagagtcagagga 380
Query: 181 catgagtacctttcattttttgaaaactgttacattctccttctcagtttattcccctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgagtacctttcattttttgaaaactgttacattctccttctcagtttattcccctcc 440
Query: 241 atgtcttagtagtgacaaacaagggcagttatttcatgcaaatgtgatgtggggtgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtcttagtagtgacaaacaagggcagttatttcatgcaaatgtgatgtggggtgtgtg 500
Query: 301 tggtgggggtgctggggactgagcccttagcttcatacatactacacagtgtttgattac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtgggggtgctggggactgagcccttagcttcatacatactacacagtgtttgattac 560
Query: 361 tgtggtatagtgtattgggattgagactggagacaaagagcagaggtgcatatttaacat 420
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tgtggtatattgtattgggattgagaccggagacaaagagcagaggtgcatatttaacat 620
Query: 421 gccaaaggggacctggcctccaggttctcccagcatccctcagtccctaccttgcaacct 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccaaaggggacctgtcctccaggttctcccagcatccctcagtccctaccttgcaacct 680
Query: 481 tcaccctctaccctgaactttctaggcccaagggttaggcttcccctcccccaagagtct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaccctctaccctgaactttctaggcccaagggttaggcttcccctcccccaagagtct 740
Query: 541 ctttcataaataatccagacattttagcgatctctctctct-ttctctctttctttctcc 599
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 741 ctttcataaataatccagacattttagcgatctctctctctctt-tctct--ctttctcc 797
Query: 600 cctccccttttcccctctccctctcccttctctcctctctttcttcttccttctct 655
|||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 798 cctcccctttccccctctccctctcccttctctcccctctttcttctcccttctct 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_f09.g1 MSMg01no453_f09.g1 CHROMAT_FILE:
MSMg01no453_f09.g1 PHD_FILE: MSMg01no453_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:11 2005
(620 letters)
>mm_chr19_21615889_21616908
Length = 1020
Score = 1183 bits (612), Expect = 0.0
Identities = 618/620 (99%)
Strand = Plus / Minus
Query: 1 caggctaaccagggcaacataaggagacattgcctagaaaaaacaaaccaaaccaaaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caggctaaccagggcaacataaggagacattgcctagaaaaaacaaaccaaaccaaaacc 625
Query: 61 aaaacctaaacaaagcctgtgtattatgtgtatcaaaagtcaagaaaaggtattttgtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaacctaaacaaagcctgtgtattatgtgtatcaaaagtcaagaaaaggtattttgtac 565
Query: 121 aatgaaaagggccaaaacaattcctgagctatagaaaagaaaaacaacaacaaaaaatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatgaaaagggccaaaacaattcctgagctatagaaaagaaaaacaacaacaaaaaatac 505
Query: 181 cagcacaaaccatctgatcctatacctcacactttacaaaattaaagtattttatagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagcacaaaccatctgatcctatacctcacactttacaaaattaaagtattttatagaaa 445
Query: 241 cacatgtaaaacatagaattctatctttcaaaagaaaacagagaaatatcatgaccgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 cacatgtaaaacatagaattctatctttcaaaagaaaacagagaaatatcatgacggaga 385
Query: 301 caagaaatagtaaaagaaaatcccgatgaattgtatcttataaatgcttaaaaaaaccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caagaaatagtaaaagaaaatcccgatgaattgtatcttataaatgcttaaaaaaaccaa 325
Query: 361 aacaaaccctttctacaaaagacagtttacaaaattgaggtgaggagctactaacaagga 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 aacaaaccctttctacaaaagacagtttacaaaattgaagtgaggagctactaacaagga 265
Query: 421 gaaaatatttgtaaaatcatggttgatgaaaatcttgtattaaaacaaaaactttcaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaaatatttgtaaaatcatggttgatgaaaatcttgtattaaaacaaaaactttcaaaa 205
Query: 481 cacttgtattggctggttttgtgtcaacttgacacagctggagttatcacagagaaagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cacttgtattggctggttttgtgtcaacttgacacagctggagttatcacagagaaagga 145
Query: 541 gcttcagttgaggaagtgcctccatgaaatctagctgtggggcattttctcaattagtga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gcttcagttgaggaagtgcctccatgaaatctagctgtggggcattttctcaattagtga 85
Query: 601 tcaagggggcagggcccctt 620
||||||||||||||||||||
Sbjct: 84 tcaagggggcagggcccctt 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
