Query= MSMg01no453_l21.b1 MSMg01no453_l21.b1 CHROMAT_FILE:
MSMg01no453_l21.b1 PHD_FILE: MSMg01no453_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:42 2005
(669 letters)
>mm_chr19_57513308_57514376
Length = 1069
Score = 899 bits (465), Expect = 0.0
Identities = 471/473 (99%)
Strand = Plus / Plus
Query: 197 aatgagcatctcatccactccagcttctgtaactgacgtaatgaagcaccttccgaggct 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aatgagcatctcatccactccagcttctgtaactgacgtaatgaagcaccttccgaggct 456
Query: 257 cattatggagagaatcccgtgcacgatgcagcgcacgcaaaggcacacaggtggggtacg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cattatggagagaatcccgtgcacgatgcagcgcacgcaaaggcacacaggtggggtacg 516
Query: 317 catgactgtgggatgtgtgcagaggccagaggaaggcatcttgtgtactcttttattatt 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 catgactgtgggatgtgcgcagaggccagaggaaggcatcttgtgtactcttttattatt 576
Query: 377 ctctaccttatttccttgaggcagactctctccctgaacctagagttcaagtttcatcag 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctctaccttatttccttgaggcagactctctccctgaacctagagttcaagtttcatcag 636
Query: 437 ctaggctggcagccagtgaattccagttcaaaccatgccagggttgcaggcagatgtggg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctaggctggcagccagtgaattccagttcaaaccatgccagggttgcaggcagatgtggg 696
Query: 497 gccacacccagctccttacttaggagctaggagctgaattccagtccttgggcttgcata 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gccacacccagctccttacttaggagctaggagctgaattccagtccttgggcttgcata 756
Query: 557 acaagtgctttgagccactgagccttatctccagcccctttatttggggcctagcctggc 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 acaagtgctttgagccactgagccttatctccagcccctttatttggggcctagcctggc 816
Query: 617 atcagtcttgttacatagctgtgattaaccttgaactcctggtcctcctgact 669
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 atcagtcttgctacatagctgtgattaaccttgaactcctggtcctcctgact 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_l21.g1 MSMg01no453_l21.g1 CHROMAT_FILE:
MSMg01no453_l21.g1 PHD_FILE: MSMg01no453_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:43 2005
(596 letters)
>mm_chr19_57649884_57650877
Length = 994
Score = 1062 bits (549), Expect = 0.0
Identities = 585/597 (97%), Gaps = 4/597 (0%)
Strand = Plus / Minus
Query: 1 tttacacacgagtcgtcacgcaaaggcttctgtatac-cgttgtccaatgtcccttgata 59
|||||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||
Sbjct: 794 tttacacacgagtcgtcaggcaaaggcttctgtat-ctcgttgtccaatgccccttgata 736
Query: 60 tgtaagccaagagccttaatgcacataaaacatttatactcaagaagcacagctctcagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgtaagccaagagccttaatgcacataaaacatttatactcaagaagcacagctctcagt 676
Query: 120 aatagacagataacgtggccgcatagctgagggcaacattagagggaactatttgtgaat 179
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 675 aatagacagat-acgtggccgcatagctgagggcaacatcagagggaactatttgtgaat 617
Query: 180 gacttacagggaaattgcccaaattatcagtggattcaaagcaactatgcagtgaaacta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gacttacagggaaattgcccaaattatcagtggattcaaagcaactatgcagtgaaacta 557
Query: 240 tgggcttgtttaaaaagcaaaacaaagaggcaaagtttatctgaaaagctgacccttctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgggcttgtttaaaaagcaaaacaaagaggcaaagtttatctgaaaagctgacccttctc 497
Query: 300 attcctctatcatagttcaccacaggaactggggctcccggggggtgggggcttgctgaa 359
||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 496 atttctctctcatagttcaccacaggaactggggctccc-gggggtgggggcttgctgaa 438
Query: 360 ctgacagaatgcttagtacttcaggaggtggtttggggattcaggtacttgcattcctga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctgacagaatgcttagtacttcaggaggtggtttggggattcaggtacttgcattcctga 378
Query: 420 gggcatccacatagaaagccaagagggccatttcagagggaaggctggccacacagaagt 479
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 377 gggcatccacatagaaagccaagagggtcatttcagaggggaggctggccacacagaagt 318
Query: 480 ggtggcttcctcttctgagactgtatcacacatgagtatatctctcaggctgttgctgat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggtggcttcctcttctgagactgtatcacacatgagtatatctctcaggctgttgctgat 258
Query: 540 gccatgacttgagtatcagaaagtgggtaattcgtaaatgaatgaagtctgatctgc 596
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 257 gccatgacttgagtatcagaaagtgggtaattcataaatgaatgaagtctgatctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 994
Length adjustment: 10
Effective length of query: 586
Effective length of database: 984
Effective search space: 576624
Effective search space used: 576624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
