BAC Information

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BAC

Clone NameMSMg01-454A23
Chromosome19 (Build37)
Map Location 25,653,632 - 25,654,060
singlet/doubletsinglet
Overlap geneDmrt1
Upstream geneE030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474
Downstream geneDmrt3, Dmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454A23.T7 (MSMg01no454_a23.b1)MSMg01-454A23.TJ (MSMg01no454_a23.g1)
ACCAG540926AG540927
length1,374752
length of high quality
(start - end)
---430 (74 - 503)
definitionCHROMAT_FILE: MSMg01no454_a23.b1 PHD_FILE: MSMg01no454_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:08 2005CHROMAT_FILE: MSMg01no454_a23.g1 PHD_FILE: MSMg01no454_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGCCCTTCTGACATTCCTCTCCTTGTCACCCCTCTATCATGTCAAAAGA
GTATCTCTCTCTCTGTTGTCGGTGTGTCGCGGTCGCTCTGGCGGATACGT
TTGACCTCGCACATAGGAGGCGAAGACGAATGGGCTATGCTATGAAGTAG
CCGCGGACACGTCGGTACATCCGCCTGAGGTAGAAAGGGGCTCGCGACGC
TAGTTTAATATATTCCGCTTCGCTTGTATTGCTACCGGCGCGTGTGATTT
AATACACATTGCCGATATATATATCCGTATGATATTGCGCGTGCGACCTC
TGTATTTATAATTGCAACACCGTGTCACCGACCCCGCCTCTCTTTATATT
ATTCCTTACAGCCGTGGTGGAGAGAAGACAGAGCGGTCGACAGTGCGAAC
AGCGCGCCGCCGTTGTTCGTAACACCCTAGCCGGCGGTGTAAGTAAGAGT
GGTCAACGTAAAGACGAGAGTGGCANGCAAGTGTATAATANATACGACAT
AAACCCAAACAATGCACAACGGACGATGCCAACACCTATACCCCTACTAT
TCGAGTAACGTACACACCATATATGCGAGACTAGAATATGTACAGCTACA
TGCACCGCATTATATAATAAGCACCAGACGTCAGAGGAGTACGAGATACT
CAGGAGAACACACACAGTGCGTAATAGAATAAATAACATACACCAAAACA
TTTATGTCAGTCACCAATCACATACGCCTACATAATAACAACCAAACCTA
ATGATCCACTACTTATATGAATATTTCGTCCACTCCACATGCTTCTTACA
TCTATACACCGCACACAGCGTTCTGACGCTAATTAACTGAAGACAAAAAG
AATACTAGTGCTAAACGGGCGCAACGCTATGAGAACGTATATTTTATATT
TGAATAATAGATATAACAGTAGATACCAGACAATAGCAAATGAACGATCA
ATGCTAGAGCGTTCTGATATATTCGAACCAACCCCTCCCAGACAAAATAC
TTATTATGCACTCGCTACAACTCGTGAGTATTATACAGCAACATGGTCAT
ATGAAGTTAAACCGAAAGCGGACTAGAAGTGCGCCTGGCCACGAACACAC
AGCAGAACGGAGAGATTCTGACATCCCTACCCAAGATGTAATAAGCGTCG
AATCGGCGTAAACATGTTGGTGACGNCACCAAGCGCACCAAACAAGTGGA
AGAATAGAATATTATATTGTCCTCGCTACACCTCTATCCCTATCACCCCA
CTTTTATCAGTCCAGACTATTTACGGACAACACACTGCGCGCTCTGAATA
ATTGGAGTATCGGAGAAACCCGCAGGCTTTTATTAATATATTTCTCCTCT
CACAACCCGCCCCACTCGAATAAC
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGCATTGATTGAGTACCTTTCACATC
CATAAGGGACCTTGAACTTGATTCTCCTGGTATGTGCTATCCTTGTCTTG
TTTTTATATGGTGACAGCTTGCAAGTGATAGGCTTGTAGGATAAAATAAA
AGCCACTCCCCTTCCTTTATCAAGTGACACAGGATTGGCTGACTCTTTCG
TTTGAGTAGAATTGCCACTGAAGCCATCCAGGCTGGGTCTTTTTGGAACA
AGAGAGTAATCTTTTGCTTATTTTTTCTATTTTCTGCATGGTAATCTTTT
TTTTTTTTTTAAATGAGGTTCTTAACCACTTAGTTTTAGTAGTTGGTCTT
TTGCTCAAGAGAAATAACCTTGTCTTTTATACTGATTTTTTTAAAAAACA
GCAAGTTGCAATAATGATCCCTTAAATTTAAAAATAAATTACTTTTATGT
GTGNGGGTGTTTTCGCCAGTGTTTTATGTCCGTGTACCATGTGTGTGCAA
TGCCCATGTGGGCCTAAAAAGGGCTCCTATCCTCTGGAGTTGTCTTATAA
GATGCTGTGGACTACCGGTGGGTGCTTGAAAAAAAAAAATTCCTTTTTAA
AAATTTTATGGTACCCTGGACCCCCCCCCCTCTCTTTTTCTTTATAGTTC
TTTTGGATAAAAAAAATCTTCTCTTGTTTTTTCCTCCCTCTTCCTTTTTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_a23.g1 MSMg01no454_a23.g1 CHROMAT_FILE:
MSMg01no454_a23.g1 PHD_FILE: MSMg01no454_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:08 2005
         (430 letters)



>mm_chr19_25653432_25654260
          Length = 829

 Score =  791 bits (409), Expect = 0.0
 Identities = 425/431 (98%), Gaps = 3/431 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcattgattgagtacctttcacatccataagggaccttgaacttgattctcctggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcattgattgagtacctttcacatccataagggaccttgaacttgattctcctggtat 260

                                                                       
Query: 61  gtgctatccttgtcttgtttttatatggtgacagcttgcaagtgataggcttgtaggata 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgccatccttgtcttgtttttatatggtgacagcttgcaagtgataggcttgtaggata 320

                                                                       
Query: 121 aaataaaagccactccccttcctttatcaagtgacacaggattggctgactctttcgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaataaaagccactccccttcctttatcaagtgacacaggattggctgactctttcgttt 380

                                                                       
Query: 181 gagtagaattgccactgaagccatccaggctgggtctttttggaacaagagagtaatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtagaattgccactgaagccatccaggctgggtctttttggaacaagagagtaatctt 440

                                                                       
Query: 241 ttgcttattttttctattttctgcatggtaatcttttttttttttttaaatgaggttctt 300
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 441 ttgcttattttttctattttctgcatggtaatctttttttttttt--aaatgaggttctt 498

                                                                       
Query: 301 aaccacttagttttagtagttggtcttttgctcaagagaaataaccttgtcttttatact 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 aaccacttagttttagtagttggtcttttgctgaagagaaataaccttgtcttttatact 558

                                                                       
Query: 361 gattttttta-aaaaacagcaagttgcaataatgatcccttaaatttaaaaataaattac 419
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gatttttttttaaaaacagcaagttgcaataatgatcccttaaatttaaaaataaattac 618

                      
Query: 420 ttttatgtgtg 430
           |||||||||||
Sbjct: 619 ttttatgtgtg 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 829
Length adjustment: 9
Effective length of query: 421
Effective length of database: 820
Effective search space:   345220
Effective search space used:   345220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)