Query= MSMg01no455_d07.b1 MSMg01no455_d07.b1 CHROMAT_FILE:
MSMg01no455_d07.b1 PHD_FILE: MSMg01no455_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:39 2005
(606 letters)
>mm_chr19_38037835_38038841
Length = 1007
Score = 810 bits (419), Expect = 0.0
Identities = 526/593 (88%), Gaps = 57/593 (9%)
Strand = Plus / Plus
Query: 22 tggctgcagcctcagcttcactttccattttagtcataattttatatgcaatataacttc 81
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 222 tggctgcagcctcagcttcactttccattttagtcataattttatatgcaacataacttc 281
Query: 82 tcctttataaagtactaagcatgatttaagaaaagggaagttg----tttttttttttta 137
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 282 tcctttataaagtactaagcatgatttaagaaaagggaagttggttttttttttttttta 341
Query: 138 aaaaaggaaacatagtttgggccctgagtctgtaatggaatttctagacttggctaactg 197
|| ||||||||||||||||||||||||||||
Sbjct: 342 aa---ggaaacatagtttgggccctgagtctgt--------------------------- 371
Query: 198 aagtgagacacccccccacccccaccccccgcaccaccaccaccaccaccaccaccgtaa 257
|||||||| |||||| || ||| ||||||||||||||||||||||||||||
Sbjct: 372 ----gagacacctccccacacc-acc------accaccaccaccaccaccaccaccgtaa 420
Query: 258 atgtgagcctattttca---tgcatgaggtggggttctgggcagatctaaaagaaaaaag 314
||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgtgagcccat---caccgtgcatgaggtggggttctgggcagatctaaaagaaaaaag 477
Query: 315 gagttgatcatgacagtcaccttgtcctgccttatgaggaagccataataaaagtatgac 374
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 478 gagttgatcatgacagtcaccttgtcctgctttatgaggaagccataataaaagtatgac 537
Query: 375 taatacaaataacttccttcttttaagtccttagaaaattcacatttatgcttccaattc 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 taatacaaataacttccttcttttaagtccttagaaaattcacatttatgcttccaattc 597
Query: 435 ccccagtattcttgaatcatgggtaattggggggctccactgattgcaagcacagctcag 494
|||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct: 598 ccccagtattcttgaatcatgggtaattggggggcttca----ttgcacgcacaactcag 653
Query: 495 cagcagcaggc-ccctgataaatggcttcagtgtccccagctcctccagggccaaagcag 553
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cagcagaaggctccc-gataaatggcttcagtgtccccagctcctccagggccaaagcag 712
Query: 554 tggactaagctagggaagcttttaagagtaaatatccaggtttaagctcccca 606
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 713 tggactaagctagggaagcttttaagagtaaatatccaggcttaagctcccca 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_d07.g1 MSMg01no455_d07.g1 CHROMAT_FILE:
MSMg01no455_d07.g1 PHD_FILE: MSMg01no455_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:39 2005
(561 letters)
>mm_chr19_38199383_38200343
Length = 961
Score = 1040 bits (538), Expect = 0.0
Identities = 556/562 (98%), Gaps = 2/562 (0%)
Strand = Plus / Minus
Query: 1 tttccctctcctttttctcttcctgagccagttttcctcgctgttctggaaataaataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tttccctctcctttttctcttcctgagccagttttcctcgctgttctggaaataaataaa 702
Query: 61 tcctaatatggcttagaaataaaaatgcatggtaaacacttggcaattatgtttttcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcctaatatggcttagaaataaaaatgcatggtaaacacttggcaattatgtttttcagt 642
Query: 121 gtggtttcaggggagtgtggcaagagaagtggacgatcaaccacttggccattggcgctg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 641 gtggtttcaggggagtgtggcaagagaagtggacgatcaaccactcggccattggcgctg 582
Query: 181 agaaaatatttcctgtcctgaccaggttgcgtttctagagaatatttaacagggagcgtt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 581 agaaaatatttcctgtcctgaccaggttgcgtttctagagaatatttaacagggagcggt 522
Query: 241 tttagtccttctaaagatgatgaaatgaaagaataaatattgacccaaacagcaccacaa 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tt-agtccttctaaagatgatgaaatgaaagaataaatattgacccaaacagcaccacaa 463
Query: 301 ctcatcaaagagtaaaatatgccctttctcaaagggggaaaaaaaa-cagccaaaatatg 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 462 ctcatcaaagagtaaaatatgccctttctcaaagggggaaaaaaaaacagccaaaatatg 403
Query: 360 ccaaaaagcttctcacaactgctcctcagtagaagcaggggccacttgggaaagccaggg 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ccaaaaagcttctcacaacagctcctcagtagaagcaggggccacttgggaaagccaggg 343
Query: 420 cctggacactaatgttccaggctacatcataggtcccttttcgctcagtgaggccaccat 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cctggacgctaatgttccaggctacatcataggtcccttttcgctcagtgaggccaccat 283
Query: 480 caccacaccatggccacgtaggcctccagccagggcaacaggacctggaggccacccaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caccacaccatggccacgtaggcctccagccagggcaacaggacctggaggccacccaag 223
Query: 540 actgcagctggctgccgctggg 561
||||||||||||||||||||||
Sbjct: 222 actgcagctggctgccgctggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
