Query= MSMg01no455_f02.b1 MSMg01no455_f02.b1 CHROMAT_FILE:
MSMg01no455_f02.b1 PHD_FILE: MSMg01no455_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:47 2005
(541 letters)
>mm_chr19_25686586_25687522
Length = 937
Score = 946 bits (489), Expect = 0.0
Identities = 525/539 (97%), Gaps = 4/539 (0%)
Strand = Plus / Plus
Query: 1 tgtttccccttcactgggtaaatgtacaaaggagacaggcccatctcctccggaatgggg 60
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tgtttccccttcactgggtaaacgtacaaaggagacaggcccatctccttcggaatgggg 260
Query: 61 tgtactggaattaggagtgaaaggtccatagtttttctggtagctagagccgctgtctct 120
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 261 tgtactggaattaggagtgaaaggtccgtagtttttctggtagctagagcctctgtctct 320
Query: 121 actttctcagctgctcaatgacagctcttgctcttcttcagagaaccccagagcactgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttctcagctgctcaatgacagctcttgctcttcttcagagaaccccagagcactgtg 380
Query: 181 ctgaactgggggtctgggggggggggctactcactgttggtgtgtggtgaggtggtaggt 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaactgggggtctggggggg----ctactcactgttggtgtgtggtgaggtggtaggt 436
Query: 241 agcttggccagtctgtcctaccttctggctcaattgtgacaggtaggcctgaagttcaga 300
|||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 437 agcttggccagtttgtcctaccttctggctcaattgtgcccggtaggcctgaagttcaga 496
Query: 301 aagcagtttgctggctgggttttgtggctatttaacaaggaacatataagcatatctcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 aagcagtttgctggctgggttttgtggctatttaacaaggaacatataagcatgtctcag 556
Query: 361 aagcaccgccccacgaccctcatcttatatttgtggatttgacagtagagaaactagagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagcaccgccccacgaccctcatcttatatttgtggatttgacagtagagaaactagagc 616
Query: 421 ctattgtgggaggagggcttgtcctgagaacaagaaggggtgtttggtcttagtcccaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctattgtgggaggagggcttgtcctgagaacaagaaggggtgtttggtcttagtcccaga 676
Query: 481 attccatgctacctacttttaattttctgttcctggttttcctggctctgggagtcccc 539
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 677 attccatgctacccacttttaattttccgttcctggttttcctggctctgggagtcccc 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 937
Length adjustment: 10
Effective length of query: 531
Effective length of database: 927
Effective search space: 492237
Effective search space used: 492237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_f02.g1 MSMg01no455_f02.g1 CHROMAT_FILE:
MSMg01no455_f02.g1 PHD_FILE: MSMg01no455_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:48 2005
(586 letters)
>mm_chr19_25824280_25825266
Length = 987
Score = 1042 bits (539), Expect = 0.0
Identities = 575/587 (97%), Gaps = 1/587 (0%)
Strand = Plus / Minus
Query: 1 tccttcaaatacagaagctaaagctccttatacactgttaaaatagtagaactgcgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tccttcaaatacagaagctaaagctccttatacactgttaaaatagtagaactgcgagtg 728
Query: 61 cacagaggaagcatgggagaaggttaaacaatggggttaacactgcctgcagtaagataa 120
||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 727 cacggaggaagcatggaagaaggttaaacaatggggttaacgctgcctgcagtaagataa 668
Query: 121 ataatttctagtgccccacagcacatcagggggcttagtctgtgataacataggttttac 180
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 667 ataatttctagtgccctacagcacatcagggtgcttagtctgtgataacataggttttac 608
Query: 181 aacgaactaaaagagtgagttggctctaaaggagtgatggccatttgaggatcagactgc 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 607 aacgaactaaaagagtgagttggctctaaaggagtgatagccatttgaggatcagactgc 548
Query: 241 taattctcctgatgtgatccataaacactattagattcactgaataaccacaatataccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taattctcctgatgtgatccataaacactattagattcactgaataaccacaatataccc 488
Query: 301 attgactgtgtacagttgttaaatgacaattcaaaactttaaagtgg-aaaaaatgggtc 359
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 487 attgactgtgtacagttgttaaataacaattcaaaactttaaagtggaaaaaaatgggtc 428
Query: 360 caccaatcagcaaatgcaaatcactctgggagagagagaaggaagttacaaagcaacatc 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 427 caccaatcagcaaatgcaaatcactctgggagagagagaatgaagttacaaagcaacatc 368
Query: 420 agaggcatagagcagaagaaatgtgctcaaagtacaccatatacttgcgagaaatggccc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agaggcatagagcagaagaaatgtgctcaaagtacaccatatacttgcgagaaatggccc 308
Query: 480 cataaaacaacaatatgatacaatattgtacaatagcaaagagacataatgttactattg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cataaaacaacaatatgatacaatattgtacaatagcaaagagacataatgttactattg 248
Query: 540 taatactgaatggtctccatattcacatttttctaagcatccttcac 586
||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 247 taatacttaatggcctccatattcaaatttttctaagcatccttcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 987
Length adjustment: 10
Effective length of query: 576
Effective length of database: 977
Effective search space: 562752
Effective search space used: 562752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
