Query= MSMg01no455_k02.b1 MSMg01no455_k02.b1 CHROMAT_FILE:
MSMg01no455_k02.b1 PHD_FILE: MSMg01no455_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:12 2005
(232 letters)
>mm_chr19_10045201_10045836
Length = 636
Score = 385 bits (199), Expect = e-111
Identities = 219/227 (96%), Gaps = 6/227 (2%)
Strand = Plus / Plus
Query: 8 gaattccatg-tttctttaaaaagggatgggaatgttcagaggtggttagaatatcattc 66
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattccatgattt-tttaaaaagggatgggaatgttcagaggtggttagaatatcattc 266
Query: 67 attcctctaaagctagagagataggtaaggaga-aacatgaaagatgtcctaaaatgcat 125
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 267 attcctctaaagctagagagataggtaaggaaagaacatgaaagatgtcctaaaatgcat 326
Query: 126 cttgggtttgactcaggacaa---gactccgatcctaagttacaagcttcagacaagaga 182
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttgggtttgactcaggacaacaagactccgatcctaagttacaagcttcagacaagaga 386
Query: 183 tgggggtggagagaaggttgggattgggttcagggtcctgcctggaa 229
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 387 tgggggtggagagaaggttgggattgggttcagggccctgcctggaa 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 636
Length adjustment: 9
Effective length of query: 223
Effective length of database: 627
Effective search space: 139821
Effective search space used: 139821
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no455_k02.g1 MSMg01no455_k02.g1 CHROMAT_FILE:
MSMg01no455_k02.g1 PHD_FILE: MSMg01no455_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:12 2005
(237 letters)
>mm_chr19_10214207_10214844
Length = 638
Score = 387 bits (200), Expect = e-112
Identities = 227/236 (96%), Gaps = 1/236 (0%)
Strand = Plus / Minus
Query: 1 cccgtgaacacaagtgaatattttgaaataaacttttcagagagggtctgagtcca-ccc 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 436 cccgtgaacacaagtgaatattttgaaataaacttttcagagagggtctgagtccacccc 377
Query: 60 cccccacccccctactgacagcaacacgaactgggccccattacaaaacctctggagtcc 119
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 376 cccccagccccctactgacagcaacacaaactgggccccattacaaaacctctggagtcc 317
Query: 120 cacaaatctgggcctgagcgtcatgactcactcgtcaacaatttccagatatatattatt 179
|||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct: 316 cacaaatctgggcctgagcgccatgactcactcgtcaacaatttccagagatagattatt 257
Query: 180 gggggaaatcaacagaaggattcttgtcctagaaatccaaagcccaggctgtctta 235
||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 256 gggagaaatcaacaggaggattattgtcctagaaatccaaagcccaggctgtctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 638
Length adjustment: 9
Effective length of query: 228
Effective length of database: 629
Effective search space: 143412
Effective search space used: 143412
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
