BAC Information

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BAC

Clone NameMSMg01-455M13
Chromosome19 (Build37)
Map Location 10,918,791 - 10,919,190
singlet/doubletsinglet
Overlap geneSlc15a3
Upstream geneLOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6
Downstream geneTmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455M13.T7 (MSMg01no455_m13.b1)MSMg01-455M13.TJ (MSMg01no455_m13.g1)
ACCAG542242AG542243
length749750
length of high quality
(start - end)		581 (46 - 626)495 (74 - 568)
definitionCHROMAT_FILE: MSMg01no455_m13.b1 PHD_FILE: MSMg01no455_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:23 2005CHROMAT_FILE: MSMg01no455_m13.g1 PHD_FILE: MSMg01no455_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTTTCCTGACCTCAAGCTGTACTACAGAGCAATAATGATAAAA
ACTGCATGGTATTGGTACAGTTACAGGCAGGTAGATCAATGGACTTGAAT
ACCCAGAAATGACCCCACACACCTATGGCCACTTGATATTTGAAAAGGAG
CTAAAACCATCCACTGGGGGGGGGGAACAGCATTTTCAACAAATGGTGCT
TGTTCAATTGTCGGTCAACACATAGAAAAATGCAAATTGACCCATTCTTA
TCTCCCTGTATAAAGATCAAGTCCAAGTGGATCGAGGACCTCCACATAAA
ACTATATACACTGAATCTAATAAAAGAGAAAATGGGGAAGAGCCTCGAAC
ACATGGGCATAAGGGAAAATTTTCTGAACAGACCACCAATGGCTTATGTC
TAAGATCAACAATCCACAAATGGGACCTCATGAAATTACAAAGCTTCTGT
AAGGCAAAGGACACTGTCAATAGGACAAAACGGGAACCAACAGACTGGGA
AAAGGTCTTTACCAATCCTACATCCAATAGAAGGCTAATATTCAATATAT
ACAAAGAACTCAAGAAGTTACACTTCAGAAAACCAAATAACCCAATTTTA
AAAAGGAGAACAGAGCTAAACAGAGAATTCTCAACTGAGGAAACTTGAAT
AGCTGAGAAGCACCTAAAGAATGTGCGACGGGTGAGGATGTGGAATACA

ATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAAGGAGCCCAGGTTGGCCTTGCAT
TTGTGGCTATGCCCCTGACTCAGACTCCTAGGTGCTAGGATTTCAAATGC
GAGCCACCATGCCTAGTTCCTTTCCATGTTTTAATGTGGTCCTCTTAACT
ATCCCCCAGGTGAGTAGTGTTGTAGCCCCTCAACTTACCTCAGATGACAG
AGAGCAGGTCCCGAGGGACGGTGAAGCAGCTGAGTCTCAGGTCCTGGCTT
GAGCCCTGTCTGTTTGTGTCACTGGGACTTGGGTGCAGGTGCAGGAGCCA
GCCAGCCTTTTCTCAACCAGAAACACCAGAGGCAGTGGGTAAATGACTGA
CAAAGTCTTGCCAGCATGGCTCCGTTTGGGTAGCTGTGCACAAGTGGGAT
TGTTGATAATAAACACTAGGAAGGGATATTATTAAAACAACCACACACGG
TGTGAATAATCACAGGTGGAATGCAGAAACACAAATAGACAGCCATGGGA
AAGATGAGGTGTCCATAGAAGGGGGGACAGGTGACAGTGGCAGTGTGTTC
AGGCTACTGGGCGCTCTGGACTTCTCTCTCATTTACTCTGCCCTCCTCAA
AGCACTCTCAGTTTTTAATGAAGTGGCTTCTGGGCTGGCATCAACAATCC
AGTGCCCCTACTGTGGACCGAATTCCTTTTATAAAGAATTCCCCTTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_m13.g1 MSMg01no455_m13.g1 CHROMAT_FILE:
MSMg01no455_m13.g1 PHD_FILE: MSMg01no455_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:23 2005
         (495 letters)



>mm_chr19_10918496_10919390
          Length = 895

 Score =  735 bits (380), Expect = 0.0
 Identities = 395/400 (98%)
 Strand = Plus / Plus

                                                                       
Query: 96  cctttccatgttttaatgtggtcctcttaactatcccccaggtgagtagtgttgtagccc 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cctttccatgttttaatgtggtcctcttaactatcccccaggtgagtagtgttgtagccc 355

                                                                       
Query: 156 ctcaacttacctcagatgacagagagcaggtcccgagggacggtgaagcagctgagtctc 215
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctcaacttatctcagatgacagagagcaggtcccgagggacggtgaagcagctgagtctc 415

                                                                       
Query: 216 aggtcctggcttgagccctgtctgtttgtgtcactgggacttgggtgcaggtgcaggagc 275
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 416 aggtcctggcttgagccctgtctgagtgtgtcactgggacttgggtgcaggtgcaggagc 475

                                                                       
Query: 276 cagccagccttttctcaaccagaaacaccagaggcagtgggtaaatgactgacaaagtct 335
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 476 cagccagccttttctcacccagaaacagcagaggcagtgggtaaatgactgacaaagtct 535

                                                                       
Query: 336 tgccagcatggctccgtttgggtagctgtgcacaagtgggattgttgataataaacacta 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgccagcatggctccgtttgggtagctgtgcacaagtgggattgttgataataaacacta 595

                                                                       
Query: 396 ggaagggatattattaaaacaaccacacacggtgtgaataatcacaggtggaatgcagaa 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggaagggatattattaaaacaaccacacacggtgtgaataatcacaggtggaatgcagaa 655

                                                   
Query: 456 acacaaatagacagccatgggaaagatgaggtgtccatag 495
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 acacaaatagacagccatgggaaagatgaggtgtccatag 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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