BAC Information

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BAC

Clone NameMSMg01-456B07
Chromosome19 (Build37)
Map Location 9,004,220 - 9,004,725
singlet/doubletsinglet
Overlap geneEml3
Upstream geneAB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1
Downstream geneMta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B07.T7 (MSMg01no456_b07.b1)MSMg01-456B07.TJ (MSMg01no456_b07.g1)
ACCAG542467AG542468
length724807
length of high quality
(start - end)
510 (49 - 558)182 (78 - 259)
definitionCHROMAT_FILE: MSMg01no456_b07.b1 PHD_FILE: MSMg01no456_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:46 2005CHROMAT_FILE: MSMg01no456_b07.g1 PHD_FILE: MSMg01no456_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCGTGTCACGAGGCCCAGTGTGACACAGTGGTCAGGGAAACT
CAGAGGGGCACAGGGAACCAAGGAGTAGAATGGCATTAAGGAAGTCCAAA
ATGACTGTAGCAGGTTCCTAGGAACTAGAATTGGACGACCTGAAGAACTG
AGGAGGATGCTCAGAGCCCCCGAGGCGCAGGAGCACGCGAGCACGCCACT
AGACAGCGGTCCAGCACTAGCAGTGCCCGTCCGGCTGGCGCTCAGGGAAT
CCAGGCCACGCCGGCCGCCCCGCCCCGTACTCACCGGGCCCCGCAGCCCC
GTCCATCCGGCCCCCGCGTTGCTCCGAGCAGCGTCGTCGGAGGCGTCTAA
GCCGCGGGGGCCATGGCTAGGGAGAGGGGAAGGAAGCACTCGAGCGCGCG
CGGAGGGGAGCCGTGCCACCCCTCGGGGGCGCTGTCGAGCGTGGGGGTCA
GGAGTTAGAGGGGGGCGCTGTGGAACCGGTTCTTTTACTTCTCTCGGGGT
TAGGCTCCCCGGGTGCGCTGACGGTCCGTCCGGAGCCCCTGTGCTGCAGC
CCAATCAGCGCGGCAAACGTATTCCCTTGTATTGCGGAATGCAGCCTGCT
CCCACTTGTACCCCCTCCCTCTTTCCCCCCTTTCCTTTGATTCTCTTTTT
CCTCCGTGTTTCCCCCCTTCTCTC
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTTGACCAGGTTGGTCTC
AGACTCAGAGATCTGCCCAACTCTACATCTCTAGTGCTACAATTGAAGGC
CAGTATCACCAACACCTGACTGATATGTAGAATATTTTAAAGAATTCATC
TGGTATGCAGATATATAGGGTGGTAGTGGGATTAAGTACCTTTAATCCCA
GCACTTGGTAGGTAGAGGCAGGCAGATTTCTGAGTGTGAGGTCCGCCTGA
TCTATAGAGTGAGTTCCTGGAGTTTTTTTTTTATAGAGAGAAACTGTCTA
AAAACAATCTTTCTTATACACTCAACATAAACGTACCGCCTTACTATTAT
AACTACGACTATTACGAATCCTCGCCCCCCTGGCAAGCTAGTTGAGGAGG
CGCATTGCTTTATAGCACTGACCATGTTCCCTGATTGTTCTGCCTTGTTC
CTTCCTCATTCTTGGTTGTTCCCATTTATCTCGTATTCCTCGTCTTTTTA
TGACCTCGTTTTTTTCTTTCTCGCCCCCCTAGCTTTTTTCCCTCGTTTTT
TTCTTCCCTTCTCTTTTTTTCTTCCTTTTTCTTCCTTTTTTTCCATCTCC
ATCTCTTCTTCCTCTTTTTCACCTCTTTTTCTACTCTTTTTTCTTTTTCT
TTCTTTTTACTTTTTTCCTTTTTTTTTTTCCGCCTTTCTGCAACTCTTCG
TTATACCTTTTCTCCCACGGTCTTATTTCTTCCCCACCTCGCCCCTTTTT
CTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b07.b1 MSMg01no456_b07.b1 CHROMAT_FILE:
MSMg01no456_b07.b1 PHD_FILE: MSMg01no456_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:46 2005
         (510 letters)



>mm_chr19_9004018_9004925
          Length = 908

 Score =  928 bits (480), Expect = 0.0
 Identities = 501/508 (98%), Gaps = 2/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   cggaattcccgtgtcacgaggcccagtgtgacacagtggtcagggaaactcagaggggca 62
           ||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cggaattcccg-gggaagaggcccagtgtgacacagtggtcagggaaactcagaggggca 650

                                                                       
Query: 63  cagggaaccaaggagtagaatggcattaaggaagtccaaaatgactgtagcaggttccta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 649 cagggaaccaaggagtagaatggcattaaggaagtccaaaatgactgtagcgggttccta 590

                                                                       
Query: 123 ggaactagaattggacgacctgaagaactgaggaggatgctcagagcccccgaggcgcag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggaactagaattggacgacctgaagaactgaggaggatgctcagagcccccgaggcgcag 530

                                                                       
Query: 183 gagcacgcgagcacgccactagacagcggtccagcactagcagtgcccgtccggctggcg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gagcacgcgagcacgccactagacagcggtccagcactagcagtgcccgtccggctggcg 470

                                                                       
Query: 243 ctcagggaatccaggccacgccggccgccccgccccgtactcaccgggccccgcagcccc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctcagggaatccaggccacgccggccgccccgccccgtactcaccgggccccgcagcccc 410

                                                                       
Query: 303 gtccatccggcccccgcgttgctccgagcagcgtcgtcggaggcgtctaagccgcggggg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gtccatccggcccccgcgttgctccgagcagcgtcgtcggaggcgtctaagccgcggggg 350

                                                                       
Query: 363 ccatggctagggagaggggaaggaagcactcgagcgcgcgcggaggggagccgtgccacc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccatggctagggagaggggaaggaagcactcgagcgcgcgcggaggggagccgtgccacc 290

                                                                       
Query: 423 cctcgggggcgctgtcgagcgtgggggtcaggagttagaggggggcgctgtggaaccggt 482
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cctcgggggcgctgacgagcgtgggggtcaggagttagaggggggcgctgtggaaccggt 230

                                       
Query: 483 tcttttacttctctcggggttaggctcc 510
           |||||||| |||||||||||||||||||
Sbjct: 229 tcttttac-tctctcggggttaggctcc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 908
Length adjustment: 10
Effective length of query: 500
Effective length of database: 898
Effective search space:   449000
Effective search space used:   449000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)