MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-457D14
Chromosome	19 (Build37)
Map Location	28,577,866 - 28,578,292
singlet/doublet	singlet
Overlap gene	Glis3
Upstream gene	LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream gene	EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC667868 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667868
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins pseudo : _no_value

name	LOC100042612 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042612
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Rfx3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19726 MGI:106582
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666997 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 3 Proteins pseudo : _no_value

name	LOC433235 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433235
definition	note : peptidylprolyl isomerase A pseudogene chr19_428.1 pseudo : _no_value

name	Glis3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226075 MGI:2444289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434460 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434460 MGI:3643316
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 497 ESTs, 7 Proteins

name	EG627788 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627788 MGI:3646480
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 343 ESTs, 10 Proteins

name	Slc1a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20510 MGI:105083
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545262 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545262
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 2177 ESTs, 10 Proteins pseudo : _no_value

name	4430402I18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381218 MGI:1918036
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppapdc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74411 MGI:1921661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042006 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042006
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG226086 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226086 MGI:3643046
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Cdc37l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67072 MGI:1914322
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC672214 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:672214
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 1115 ESTs, 10 Proteins

name	Ak3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56248 MGI:1860835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rcl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59028 MGI:1913275
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC433238 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433238
definition	note : high mobility group protein 1-like pseudo : _no_value

name	Jak2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16452 MGI:96629
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Insl6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27356 MGI:1351595
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rln1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19773 MGI:97931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5033414D02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67759 MGI:1915009
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd274 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60533 MGI:1926446
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdcd1lg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58205 MGI:1930125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042612 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270476 GeneID:100042612
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100042612 transcript_id : XM_001478637.1

name	Rfx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328188 GeneID:19726 MGI:106582
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulatory factor X, 3 (influences HLA class II expression) transcript_id : NM_011265.2

name	Glis3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344155 GeneID:226075 MGI:2444289
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GLIS family zinc finger 3 transcript_id : NM_175459.5

name	EG434460 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270414 GeneID:434460 MGI:3643316
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 497 ESTs, 7 Proteins product : predicted gene, EG434460 transcript_id : XM_001477346.1

name	EG627788 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270481 GeneID:627788 MGI:3646480
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 343 ESTs, 10 Proteins product : predicted gene, EG627788 transcript_id : XM_892488.3

name	Slc1a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130482 GeneID:20510 MGI:105083
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 transcript_id : NM_009199.2

name	4430402I18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119372320 GeneID:381218 MGI:1918036
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4430402I18 gene transcript_id : NM_198651.2

name	Ppapdc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361366 GeneID:74411 MGI:1921661
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidic acid phosphatase type 2 domain containing 2 transcript_id : NM_028922.2

name	EG226086 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270418 GeneID:226086 MGI:3643046
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : predicted gene, EG226086 transcript_id : XM_140592.5

name	Cdc37l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802417 GeneID:67072 MGI:1914322
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell division cycle 37 homolog (S. cerevisiae)-like 1 transcript_id : NM_025950.2

name	LOC672214 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270483 GeneID:672214
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 1113 ESTs, 10 Proteins product : similar to ribosomal protein L26, transcript variant 1 transcript_id : XM_001478773.1

name	LOC672214 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270485 GeneID:672214
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 67 ESTs, 1 Protein product : similar to ribosomal protein L26, transcript variant 2 transcript_id : XM_001478782.1

name	Ak3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956103 GeneID:56248 MGI:1860835
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate kinase 3 transcript_id : NM_021299.1

name	Rcl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31581584 GeneID:59028 MGI:1913275
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA terminal phosphate cyclase-like 1 transcript_id : NM_021525.2

name	Jak2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326479 GeneID:16452 MGI:96629
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Janus kinase 2 transcript_id : NM_008413.2

name	Jak2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326477 GeneID:16452 MGI:96629
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Janus kinase 2 transcript_id : NM_001048177.1

name	Insl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305184 GeneID:27356 MGI:1351595
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulin-like 6 transcript_id : NM_013754.1

name	Rln1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51093875 GeneID:19773 MGI:97931
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : relaxin 1 transcript_id : NM_011272.1

name	5033414D02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802232 GeneID:67759 MGI:1915009
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5033414D02 gene transcript_id : NM_026362.2

name	Cd274 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45433566 GeneID:60533 MGI:1926446
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD274 antigen transcript_id : NM_021893.2

name	Pdcd1lg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946739 GeneID:58205 MGI:1930125
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : programmed cell death 1 ligand 2 transcript_id : NM_021396.1

name	LOC100042612 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270477 GeneID:100042612
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478687.1

name	Rfx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328189 CCDS:CCDS29725.1 GeneID:19726 MGI:106582
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence ISS] GO_process : GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : regulatory factor X, 3 (influences HLA class II expression) protein_id : NP_035395.2

name	Glis3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113866026 GeneID:226075 MGI:2444289
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0044428 - nuclear part [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003704 - specific RNA polymerase II transcription factor activity [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : Kruppel-like zinc finger protein Glis3 product : GLIS family zinc finger 3 protein_id : NP_780668.3

name	EG434460 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270415 GeneID:434460 MGI:3643316
definition	codon_start : 1 product : similar to Rps15a protein protein_id : XP_001477396.1

name	EG627788 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82998589 GeneID:627788 MGI:3646480
definition	codon_start : 1 product : similar to cytoplasmic dynein light chain 1 protein_id : XP_897581.1

name	Slc1a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678001 CCDS:CCDS29727.1 GeneID:20510 MGI:105083
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0015501 - glutamate:sodium symporter activity [Evidence IDA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : solute carrier family 1, member 1; glutamate transporter mEAAC2; excitatory amino acid carrier 2 product : solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 protein_id : NP_033225.1

name	4430402I18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119372321 GeneID:381218 MGI:1918036
definition	codon_start : 1 product : hypothetical protein LOC381218 protein_id : NP_941053.2

name	Ppapdc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77861908 CCDS:CCDS29728.1 GeneID:74411 MGI:1921661
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 product : phosphatidic acid phosphatase type 2 domain containing 2 protein_id : NP_083198.1

name	EG226086 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270419 GeneID:226086 MGI:3643046
definition	codon_start : 1 product : similar to Tekt5 protein protein_id : XP_140592.5

name	Cdc37l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385440 CCDS:CCDS29729.1 GeneID:67072 MGI:1914322
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IDA] GO_process : GO:0051301 - cell division [Evidence IEA] codon_start : 1 note : Hsp90-associating relative of Cdc37 product : cell division cycle 37 homolog (S. cerevisiae)-like 1 protein_id : NP_080226.1

name	LOC672214 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270486 GeneID:672214
definition	codon_start : 1 product : similar to ribosomal protein L26 isoform 2 protein_id : XP_001478832.1

name	LOC672214 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270484 GeneID:672214
definition	codon_start : 1 product : similar to ribosomal protein L26 isoform 1 protein_id : XP_001478823.1

name	Ak3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956104 CCDS:CCDS29730.1 GeneID:56248 MGI:1860835
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004017 - adenylate kinase activity [Evidence IEA] [Evidence TAS]; GO:0005525 - GTP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046899 - nucleoside triphosphate adenylate kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0019201 - nucleotide kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA] codon_start : 1 note : adenylate kinase 3 alpha-like 1 product : adenylate kinase 3 protein_id : NP_067274.1

name	Rcl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946950 CCDS:CCDS29731.1 GeneID:59028 MGI:1913275
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003963 - RNA-3'-phosphate cyclase activity [Evidence ISS] [Evidence IEA] GO_process : GO:0006365 - 35S primary transcript processing [Evidence ISS]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 note : RNA 3'-terminal phosphate cyclase-like protein product : RNA cyclase homolog protein_id : NP_067500.1

name	Jak2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326478 GeneID:16452 MGI:96629
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004718 - Janus kinase activity [Evidence IMP] [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IDA] [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IMP]; GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence TAS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007259 - JAK-STAT cascade [Evidence IMP] [Evidence IDA]; GO:0030099 - myeloid cell differentiation [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007262 - STAT protein nuclear translocation [Evidence IDA]; GO:0007260 - tyrosine phosphorylation of STAT protein [Evidence IMP] codon_start : 1 product : Janus kinase 2 protein_id : NP_001041642.1

name	Jak2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326480 GeneID:16452 MGI:96629
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004718 - Janus kinase activity [Evidence IMP] [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IDA] [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IMP]; GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence TAS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007259 - JAK-STAT cascade [Evidence IMP] [Evidence IDA]; GO:0030099 - myeloid cell differentiation [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007262 - STAT protein nuclear translocation [Evidence IDA]; GO:0007260 - tyrosine phosphorylation of STAT protein [Evidence IMP] codon_start : 1 product : Janus kinase 2 protein_id : NP_032439.2

name	Insl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305185 CCDS:CCDS29732.1 GeneID:27356 MGI:1351595
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IEA] GO_process : GO:0007582 - physiological process [Evidence IEA] codon_start : 1 note : relaxin/insulin-like factor 1 product : insulin-like 6 protein_id : NP_038782.1

name	Rln1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51093876 CCDS:CCDS29733.1 GeneID:19773 MGI:97931
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IEA] GO_process : GO:0007582 - physiological process [Evidence IEA] codon_start : 1 exception : mismatches in translation product : relaxin 1 protein_id : NP_035402.1

name	5033414D02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312800 CCDS:CCDS29734.1 GeneID:67759 MGI:1915009
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC67759 protein_id : NP_080638.1

name	Cd274 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11230798 CCDS:CCDS29735.1 GeneID:60533 MGI:1926446
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0005102 - receptor binding [Evidence IPI] codon_start : 1 note : programmed cell death 1 ligand 1; CD 274 antigen product : CD274 antigen protein_id : NP_068693.1

name	Pdcd1lg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946740 CCDS:CCDS29736.1 GeneID:58205 MGI:1930125
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0042130 - negative regulation of T cell proliferation [Evidence IDA]; GO:0042102 - positive regulation of T cell proliferation [Evidence IDA] codon_start : 1 note : butyrophilin-like protein product : programmed cell death 1 ligand 2 protein_id : NP_067371.1

name	LOC667868 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667868
definition	number : 1 pseudo : _no_value

name	LOC100042006 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042006
definition	number : 1 pseudo : _no_value

name	LOC100042006 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042006
definition	number : 2 pseudo : _no_value

name	LOC100042006 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042006
definition	number : 3 pseudo : _no_value

name	LOC666997 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270478 GeneID:666997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 3 Proteins product : similar to ribosomal protein L29 pseudo : _no_value transcript_id : XR_033825.1

name	LOC545262 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270482 GeneID:545262
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 2177 ESTs, 10 Proteins product : similar to elongation factor 1A pseudo : _no_value transcript_id : XR_033850.1

clone name	MSMg01-265J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519E21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-339F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214H20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-391M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217J14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-457D14.T7 (MSMg01no457_d14.b1)	MSMg01-457D14.TJ (MSMg01no457_d14.g1)
ACC	AG543341	AG543342
length	1,533	750
length of high quality (start - end)	---	425 (80 - 504)
definition	CHROMAT_FILE: MSMg01no457_d14.b1 PHD_FILE: MSMg01no457_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:21 2005	CHROMAT_FILE: MSMg01no457_d14.g1 PHD_FILE: MSMg01no457_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:21 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCCACTATTTGACATCTCTGCTGTGCGCGCGTGACGATCCTACATACCTC TTTGCTCTACAAGCACTGACAGCGCCGCGCGACTGCATATAATTAACTTT CTCACCGCGAGAACATAGATCGTCAGCTATCTGAGAGTCGGCGCTAGCAA GACACGACGACAAGAACAGCTACATATGAGAGACGCACATCATATTACAT CGACCACCGAGAACCACAGATCAGAACGCACAGAACGATACACGAGCAGA TAGACGTATGGTGTCACTTATATACTTAGAGCTCGTACATAGTCATACAC TCCTGTAACATCTGCGACCGCGTAACGACGTATAGACCACAAGATATCGA TATCATATTGATATATCCGACAGTGCGTCTCATGTGTACTACTTGCTATC GATATGCTCGCGGGCTCTCGCTTATTAATCTCTCTACTACCTGCTTATAT CTATCACTTTGCTGTCGTAGCATATCGCATCTCACTNCTGACATGCTCGT CTCACACCTGTAGATTGTCATCACGTAGTGTGTGACCTACCTGTCATCTT GTAGACGTGTACNTCGTACTCATACTATCGTGAGTATGCGTGAGGCGCGG AGTGGGAGAGATACGTAGANCGTCGATAGGTATCGATTTGGTCGTCAGTA TAATGCTCAGACTACGCANGCGGTGGAGAGCGTAGCACGTGCTGCATGGA CCGTGCGCTGAGGCACGCAGAGCGACTGTACGAGCTGTGNCGAGTGCGAA GCTAGCAAGCTAGTTATAACTACAACTAAGCTAGCCGAATCTATATCTGC AGCTGCGATCATCGAGAGATACTGCATCACACAANGTCGATAGCACGGAG GAGTACTCTCACCCTGACTCTGATATGCCAGTATGACATATAGTCGCTAC GTCGCGATATCATTGNGTAACAGAAGTACCGCTGCAGTGCNACTGCAGTT GTCACNGCTGTCGAGCGCAGTATATGTGGTATGCGAGTTGAGTAGGTGTG CGTGGAGATAGGGAGNGGACTGTGCCTAAGTGTATATGATAAGCGCCGAG CTCCGGTCGCTCTAGCGCATGCTATNATCGNTGACGGCGTGTGGNTGTCG TGACAACCTGTACTCGCGCATTTGCGTCNCTGCGTGTTGGCATGAGTGGN GCGTATGCTGTGCGGCGTGCGTGTCGTAGCGACGCCTTCGAGTCAGATAT ACAATGCGTACTACATCTGCCGGCACAGGCCGTATAGCGATGACGGTGTC TGCGTTACGACGCTGTGACACACGGACGCGTACGTCGCGACGACAGTGCG TATATCACGATAAGCAATAAGACAGTGCTGAGATACATTGGAAGCGATGA GTCAGCACGACGACACACTACGTCACTACTGCGCTATCCCGTTGCGTCGA GCGTGCGCTGTGAGTGTGTCGATTNATCGACGCGCTCTCGACATATACTC GTCTCTTCTACGATCTATATTCCTGTCGTCGCAGCGCTACACAAAGTGCG TGCGTGCCGTCGCGTATCTTGTGATAAACGCGN	TTTTTTCTATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCTGGGTTGCTGATTAGT GTGATGCTGAATAGGCCCCAGGAGGCAAGAGGATGCTGATAGTCTGAAGC CTGAAAGGAGGAGTCAAGGTAGGGAGATGGGAAAGCTCGGTGGAGCCACT TCCAGGGACATTCTGCCACGGAACATGGTCTGTCCCCTGCCTTCCCTAGC AAGCTGTCCTCTCATTTCTGTTGAATATAAATCCACCCCATATCATTTTC CTTGGACTTCCTCAGAACTAGGTTCCTTTTTTGTTTGCATCTCTTTGCTT ATAGAATGTGATGCTTCCCATCACAGATGGGCCCAGGCCTGCCTGCCTCC TCTGATGTTAACATGGGTAGGAACGGAGAAGGCTTCTGTAGAGGACATGG TGCCAAGCATCACGGACCGTTGCTCTGAGTGGACAGGGATGTTACCAGTT AGCAGCCTCAGTCCTACCGTGGTGTTCTGTGAACAGCGTGGCTGTGCATT ATGAATGTTCCTGAGAGTTTGTTAGGTCTTCGGCGCTCAAATTTTGTTGA ACAGCTTCGCCGGTACTGCTTCTGTTGTTTATTACTCTTCCTATTTGTGT GTATACTAATATCTTTTTTTTTTTTTTTTTTACCTTCTTCTGTTTTTTCC CGATTTTTTTTTTATTCCCCATACCTTCTTTTGTTTACCACCTTTTTTCT
quality values	Open. Hide. 6 6 6 6 6 8 8 8 8 8 8 10 10 8 8 6 6 6 6 8 8 8 8 6 6 6 6 6 6 6 8 6 8 9 9 9 9 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 9 11 9 9 9 9 6 6 6 6 6 6 6 6 6 6 6 6 8 8 9 8 9 9 8 8 8 8 8 8 9 8 8 8 8 8 8 8 6 6 6 6 6 7 10 13 12 10 8 10 8 7 7 6 6 6 6 8 6 8 8 8 9 10 9 9 8 8 6 6 6 6 9 8 8 8 8 6 6 7 10 9 9 9 9 9 9 9 9 9 7 8 7 9 9 9 11 11 11 13 11 8 10 6 6 6 6 6 6 8 6 8 8 8 9 11 11 11 9 8 8 8 8 8 8 8 8 8 6 6 10 8 8 6 6 6 6 6 7 9 9 9 10 9 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 8 10 11 9 9 6 6 6 6 6 6 8 8 8 8 8 8 8 8 10 9 9 9 9 8 6 6 6 8 8 10 10 10 8 8 8 8 8 8 10 10 10 8 6 6 6 6 6 8 8 10 8 10 8 8 8 8 8 7 7 8 10 11 11 11 10 10 11 11 11 13 18 11 12 10 8 8 6 6 6 6 6 9 9 9 9 9 10 10 10 10 8 8 8 8 6 8 8 10 8 7 7 8 8 6 6 6 6 8 6 8 8 8 8 8 9 9 9 9 12 11 11 11 10 8 8 8 8 8 8 8 8 8 6 8 6 6 6 6 8 6 8 6 6 8 6 8 8 8 8 8 8 8 8 6 8 6 6 8 6 8 8 8 6 8 6 6 8 6 8 10 12 8 8 8 8 6 6 7 6 10 8 6 6 6 6 6 6 6 6 6 8 8 6 6 6 8 8 10 12 6 6 6 6 8 8 6 8 8 8 10 8 13 9 8 10 6 10 10 11 11 11 9 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 10 10 8 9 9 8 8 8 9 9 9 9 6 6 6 6 6 8 8 8 3 0 3 6 6 6 6 8 9 9 9 9 9 11 11 11 11 11 11 8 8 8 8 8 8 9 9 9 8 8 8 8 6 6 6 7 10 8 8 6 6 8 6 8 8 8 6 6 8 8 8 10 11 8 8 8 8 8 8 8 8 8 8 10 9 9 13 11 11 9 9 9 9 6 6 6 3 0 3 8 8 8 7 8 7 9 9 8 8 8 8 8 8 8 8 10 10 8 6 6 6 6 9 8 8 9 9 9 10 14 12 11 11 11 11 12 10 8 8 6 6 6 6 6 6 6 8 8 8 6 6 6 6 3 0 3 6 6 6 6 10 10 8 6 6 6 6 6 6 6 8 8 10 6 6 6 6 6 6 6 6 6 7 7 8 6 8 8 8 11 15 10 8 8 6 8 6 6 6 6 7 6 3 0 3 10 10 10 10 8 8 8 8 8 8 8 8 8 6 8 6 6 9 9 9 10 10 9 6 6 6 6 10 10 9 7 6 6 8 8 14 14 15 8 7 7 7 8 8 12 11 13 11 9 9 9 8 8 8 8 8 6 6 6 6 10 7 6 6 6 9 11 11 3 0 3 8 8 8 8 8 8 6 6 6 6 6 8 8 9 10 10 10 10 10 9 9 9 9 9 8 8 8 12 10 10 8 8 8 8 8 6 8 6 8 6 8 6 6 6 8 8 8 6 6 8 8 10 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 9 9 6 6 6 6 6 7 8 8 8 8 8 8 11 15 19 15 14 11 12 11 10 8 8 3 0 3 6 8 7 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 10 9 9 8 6 6 7 7 8 6 8 8 9 8 8 8 8 8 8 10 8 6 6 6 6 8 9 9 9 9 9 6 6 6 6 8 8 8 8 8 10 8 8 10 10 16 6 6 6 6 10 8 9 9 7 7 7 8 6 6 3 0 3 6 6 10 10 9 7 8 6 6 6 6 6 6 6 6 6 6 6 6 6 6 8 3 0 3 6 8 6 6 7 7 6 6 6 6 6 6 3 0 3 6 8 8 8 8 8 6 6 6 8 10 8 6 6 10 8 8 6 6 6 6 6 6 6 15 13 9 8 8 8 8 8 8 8 8 8 8 8 6 6 9 10 6 6 6 6 7 6 9 10 9 10 6 8 8 8 8 3 0 3 9 9 9 9 9 8 10 6 6 6 6 6 6 10 10 11 11 12 12 8 8 6 6 6 6 6 8 6 6 6 6 6 6 8 8 10 10 10 10 11 11 11 10 6 6 6 6 6 6 6 6 6 6 6 8 8 10 3 0 3 6 6 3 0 3 6 8 6 8 8 8 8 9 8 8 8 3 0 3 8 8 8 8 8 6 6 6 6 6 6 6 6 6 7 6 8 8 10 8 8 8 8 12 7 7 6 6 10 10 9 3 0 3 10 8 8 8 8 8 8 9 8 8 8 8 8 8 10 10 10 10 3 0 3 8 8 10 12 8 8 8 8 9 9 9 9 9 8 11 8 8 8 8 8 8 8 8 10 8 10 9 9 9 12 7 6 6 6 7 7 8 8 6 8 6 6 6 6 7 8 8 8 8 8 13 8 8 8 8 8 8 10 10 10 10 8 8 8 8 7 6 8 8 6 6 6 6 8 10 7 6 6 6 10 15 12 10 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 11 10 6 6 6 6 8 8 6 6 6 6 8 8 10 9 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 8 12 13 11 8 8 10 11 11 11 10 8 10 8 8 8 8 8 8 8 8 10 10 8 10 10 10 18 14 18 10 8 8 7 6 6 6 8 8 6 6 6 6 8 8 8 8 8 8 11 13 8 6 6 6 6 6 6 8 8 8 8 8 13 12 12 10 10 8 6 6 6 8 6 7 6 6 8 8 6 6 6 6 6 8 8 8 8 8 6 6 6 6 9 11 8 8 8 8 8 10 10 8 8 8 6 6 6 7 7 10 6 6 10 7 6 6 6 8 8 10 8 8 8 9 12 12 9 9 7 7 8 3 0 3 9 6 6 6 6 6 6 8 8 11 8 8 6 6 6 6 8 8 8 8 8 8 8 9 9 13 12 10 10 13 12 15 8 15 10 10 8 8 8 8 8 8 8 8 8 8 10 10 10 10 6 6 6 6 8 8 6 6 6 8 8 9 8 8 8 6 6 6 6 6 6 7 6 6 8 6 6 8 8 6 6 6 6 6 6 6 8 6 6 6 6 9 6 6 6 8 8 6 8 9 8 8 8 7 7 3 0	Open. Hide. 16 16 9 10 8 7 7 7 7 12 11 11 9 9 19 19 17 20 20 28 28 33 39 39 37 37 29 31 37 32 32 37 37 23 25 9 9 6 6 6 6 6 6 8 10 17 16 21 15 15 26 27 41 47 47 47 44 44 50 50 47 34 25 18 9 9 11 11 11 9 13 12 14 12 12 23 23 33 33 37 37 37 43 57 57 57 57 57 59 59 59 59 57 57 57 57 57 53 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 42 37 32 37 37 37 31 30 30 32 44 40 48 46 48 46 48 68 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 54 54 54 54 57 57 57 57 57 43 43 32 32 31 42 38 38 50 50 57 57 50 50 50 50 50 50 59 54 57 57 57 57 57 57 57 52 57 57 68 68 57 57 52 52 52 57 57 57 57 57 57 50 50 50 50 50 54 57 57 68 59 59 59 59 57 57 57 57 57 57 57 57 57 59 68 68 68 68 68 57 59 57 59 59 59 59 59 68 59 68 68 59 59 59 59 68 59 59 68 68 44 44 33 33 42 42 42 42 42 42 57 57 59 59 59 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 48 48 48 59 59 59 31 30 11 10 10 10 11 13 13 12 14 14 14 25 27 59 59 50 50 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 59 59 59 57 57 68 68 68 44 59 43 39 39 30 30 30 44 44 54 59 59 59 59 59 59 68 68 68 68 68 68 59 59 57 59 59 59 59 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 46 48 47 46 44 42 42 32 25 25 25 25 25 28 36 42 42 46 44 44 43 43 43 46 46 48 47 54 48 59 68 68 59 43 36 28 28 32 32 24 34 14 14 14 30 30 43 37 33 28 28 33 33 37 43 59 59 43 35 35 37 35 36 30 28 28 19 14 19 17 23 16 18 18 18 20 17 28 28 24 30 22 17 18 18 19 20 16 19 16 23 12 12 10 20 16 14 14 17 19 26 20 19 30 22 28 18 19 8 8 8 8 13 13 11 10 11 11 11 11 11 11 11 11 15 14 8 8 8 8 8 8 8 8 8 10 11 11 11 11 12 10 10 10 10 11 11 12 10 10 10 10 10 11 9 8 8 8 8 8 10 10 8 8 10 8 10 10 10 11 9 8 8 8 12 19 12 15 9 9 9 10 18 11 11 11 15 15 10 9 9 12 8 8 8 8 8 8 8 10 13 11 11 11 12 12 12 13 11 8 8 8 8 8 8 12 11 8 8 8 7 8 8 8 8 11 13 10 10 10 10 10 9 9 9 10 12 10 8 8 8 8 8 10 10 15 13 24 30 21 18 14 19 14 12 15 16 21 16 16 8 10 10 10 8 8 8 8 8 6 6 6 6 13 16 18 20 16 9 8 8 8 8 10 11 19 14 15 15 11 17 15 18 10 11 11 10 10 28 19 10 8 9 8 8 8 8 8 8 9 14 13 21 14 10 8 8 8 8 8 8 10 9 10 11 17 22 19 17 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no457_d14.g1 MSMg01no457_d14.g1 CHROMAT_FILE:
MSMg01no457_d14.g1 PHD_FILE: MSMg01no457_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:21 2005
         (425 letters)



>mm_chr19_28577666_28578492
          Length = 827

 Score =  743 bits (384), Expect = 0.0
 Identities = 416/432 (96%), Gaps = 12/432 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccctgggttgctgattagtgtgatgctgaataggccccaggaggcaagaggatgctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acccctgggttgctgattagtgtgatgctgaataggccccaggaggcaagaggatgctga 568

                                                                       
Query: 61  tagtctgaagcctgaaaggaggagtcaaggtagggagatgggaaagctcggtggagccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tagtctgaagcctgaaaggaggagtcaaggtagggagatgggaaagctcggtggagccac 508

                                                                       
Query: 121 ttccagggacattctgccacggaacatggtctgtcccctgccttccctagcaagctgtcc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctccagggacattctgccacggaacatggtctgtcccctgccttccctagcaagctgtcc 448

                                                                       
Query: 181 tctcatttctgttgaatataaatccaccccatatcattttccttggacttcctcagaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctcatttctgttgaatataaatccaccccatatcattttccttggacttcctcagaact 388

                                                                       
Query: 241 aggttcctttttt----gtttgcatctctttgcttatagaatgtgatgcttcccatcaca 296
           |||||||     |    ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 aggttcc----ataaaggtttgcatctctttgcttatagaatgtgatgctccccatcaca 332

                                                                       
Query: 297 gatgggcccaggcctgcctgcctcctctgatgttaacatgggt---aggaacggagaagg 353
           |||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||
Sbjct: 331 gatgggcccaggcctgcctgcctcctctgatgttaacatgggtaggaggaatggagaagg 272

                                                                       
Query: 354 cttctgtagaggacatggtgccaagcatcacggaccgttgctctgagtggacagggatgt 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 271 cttctgtagaggacatggtgccaagcatcacggaccgttgctctgagtggacagggatg- 213

                       
Query: 414 taccagttagca 425
           ||||||||||||
Sbjct: 212 taccagttagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 827
Length adjustment: 9
Effective length of query: 416
Effective length of database: 818
Effective search space:   340288
Effective search space used:   340288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information