BAC Information

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BAC

Clone NameMSMg01-457J14
Chromosome19 (Build37)
Map Location 12,136,557 - 12,136,817
singlet/doubletsinglet
Overlap genenone
Upstream geneMs4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424
Downstream geneOlfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457J14.T7 (MSMg01no457_j14.b1)MSMg01-457J14.TJ (MSMg01no457_j14.g1)
ACCAG543627AG543628
length1,321759
length of high quality
(start - end)
---247 (79 - 325)
definitionCHROMAT_FILE: MSMg01no457_j14.b1 PHD_FILE: MSMg01no457_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:52 2005CHROMAT_FILE: MSMg01no457_j14.g1 PHD_FILE: MSMg01no457_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCCCGCGAGGGCGGGGGGAGGGGNGNNTCCTNCCCTGCCCCGCTATCTCG
CGAAGCTGTGGCGCGGTGGGCTGCGGGCCGTCATGTTATCCTACGACGGG
CTGTGTGTGTTTGGTGTCGTGTGTAGCGTGGTGTATGGTGTGGGACGTAT
AGTGTACCGGAGGCTAGCTGCGCCTGCGGTCCGCGCGAGGGAGCGCAGCA
CGCCACCATTCATGAGCTCCTTTTGCGTTGCTTTAATAGGAGAGAGGCGA
CATTATCCCGCATACCTATACTCCCGTGGGGCTTTCGAGAATTGTTTCTA
TGGAGGAGGGATGATAATGAAGCAAACAATAGTGCACAGGAGAAGCGGGG
AGAGACGTCGGATCCGTTCTATTTATACACTCCGAGTGGCTATGAGGGTA
TGTTTTTGACAGAAACATATTTATATCAAAGTTTAGTAATTAGATATTTG
AATGAAGTGTGGTAGAGATGCGATATCTAGTTGTAAAGGCTATGTCGTGG
GACTGAGCCTCGATACGCTAGGTCGACTATGCCGGCAGCGAGCGAGAGGA
GAGTGGCTGCCGGTCGTGCGGTCGGGAGTGCGCAGAACACCATGATGACA
CTAGACAAACACTAACTCTCCGTGACCTGTGAGGCTTAAGCTAGTGAGAC
ACGGCTGCCGACGTTCTGATTAGTCGAGCGAGAGCCGACTGTGGCCGACC
AGATGACTCGCACCTCATCTTAACTATGGAGAATATAGTTAAATATCAAC
GGACTACTATCTCTGCGGATCGAAGATCGCAGTGTGCAGCGAATGACAGT
TGCTCGTCTTCATGATGAGCGCGGTAAAGACGTGGGAGTGCGCCGGAGGC
GTGGTGCCGCGATATATAACAGCAAGCGCGTGCGTTACGCCGACTATATN
CTATACCGATCGTTCTCTGGTCGAGCATTAGACACGCATAATACCGGCTG
AATGAGCATATAAGCGCTGAGCAGCAGCTAATATTGCAGCGGCGAGATGA
AGGTAGTAGCAGTGAGCCTTGACTTGAGAACACGACANTGTGTGATGGAG
ATTACTATCTTGCAGGTATTTACGTGCGAGCGGAGGTGTGGACGAGCGCA
TGATTACGACACAATGCTTGTAACGAACACAACCTCAACTGATGATGTGT
GATCACCCATCGNGCCTCACACCTAACAGATGTGTCACGTAGTAAGTAAC
AGTATGTGCTGTCTATTGAGTGTGTATGCTCGATGATGGATATACGAGCG
ATACAGAATATATACATTACCATTGTGCACTAAGACTAAACGATCGTATG
CGTGGTACTATATAAGAAGCA
NTTTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAACACAATGTCCCCTTCCTG
TTCGTGACACCTACCTTTGTTGTTTGTTGGTGAGAAGATTGATTTTGGTG
TGAAATAGTTAATATCCCTGGAAAAACACTTCAAGTTAAGTTAGTTAAAC
ATAATCAATGACACCATCTTGATTTCAATATGCCATAACCCTAACCCTAG
CTAGCAGCTGAATATCTTTACCTATTTCCTTTATCTCAAAACTTCAGATA
ATATGATATGATGCTAGGTCCACTGTTGTGTTTCTGTTGACATTAATCAC
TGAAAGATGTTCTTCTGGATGCAAAACTCTTTGCATGATTGAATATCTTC
GTGCCCTTGCTTCATTTGCCTCGATAGCAAACTCAAGCAGTCACATCTTT
GAGGTTTTTCTACTTTGTTTCCTTCTTATATTCAAATCCCTTTACCTCAG
GCTTAACATAAGCCTGATAAAGGGACTCTTACTGGTTAGGGCTGTAGAAA
TAATTGACTGATTGTAGCATTGATGGGGCATTTTTTAATGGGAGTCCTTT
AAACTTTTTTAAAATCTGCTTATTTACACTTTTTTCATTTATTGACATAT
GTTGGCCGGGGTTTCTTTTTTTTTTATTTTTAACTATATACCCCTATTTG
GTTTTTACCCCTCTTAAACTTCTTCCCCTTTTGCCCCTTTAGTTATTGTT
CTTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_j14.g1 MSMg01no457_j14.g1 CHROMAT_FILE:
MSMg01no457_j14.g1 PHD_FILE: MSMg01no457_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:52 2005
         (247 letters)



>mm_chr19_12136372_12137017
          Length = 646

 Score =  393 bits (203), Expect = e-114
 Identities = 240/261 (91%), Gaps = 14/261 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaacacaatgtccccttcctgttcgtgacacctacctttgttgtttgttggtgagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttaacacaatgtccccttcctgttcgtgacacctacctttgttgtttgttggtgagaaga 245

                                                                       
Query: 61  ttgattttggtgtgaaatagttaatatccctgga--------------aaaacacttcaa 106
           ||| ||||||| ||||||||||||||| ||||||              |||||| || ||
Sbjct: 246 ttgtttttggtatgaaatagttaatattcctggaaaaaatattcctggaaaacatttaaa 305

                                                                       
Query: 107 gttaagttagttaaacataatcaatgacaccatcttgatttcaatatgccataaccctaa 166
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gttaaattagttaaacataatcaatgacaccatcttgatttcaatatgccataaccctaa 365

                                                                       
Query: 167 ccctagctagcagctgaatatctttacctatttcctttatctcaaaacttcagataatat 226
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 366 ccctagctagcagctgaatatctttacctatttcctttatctcaaaacttcagagaatat 425

                                
Query: 227 gatatgatgctaggtccactg 247
           |||||||||||||||||||||
Sbjct: 426 gatatgatgctaggtccactg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space:   151606
Effective search space used:   151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)