BAC Information

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BAC

Clone NameMSMg01-458K01
Chromosome19 (Build37)
Map Location 44,640,293 - 44,780,898
singlet/doubletdoublet
Overlap geneHif1an
Upstream geneNkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8
Downstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458K01.T7 (MSMg01no458_k01.b1)MSMg01-458K01.TJ (MSMg01no458_k01.g1)
ACCAG544412AG544413
length743752
length of high quality
(start - end)
373 (126 - 498)157 (126 - 282)
definitionCHROMAT_FILE: MSMg01no458_k01.b1 PHD_FILE: MSMg01no458_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:17 2005CHROMAT_FILE: MSMg01no458_k01.g1 PHD_FILE: MSMg01no458_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,780,526 - 44,780,898)(44,640,293 - 44,640,445)
sequence
CCCGGTCTATAATTGCGGCGCTAAANGANNACTACATCCCTAGCTGCNNG
GAANCCANAAATTTTCCACAAACAAGGCAGGNAGNGGNGGCACACGCCTT
TAATCCCAGCACTTAGGATGCACAGGCAGGTGGATTTCTGAGTTCAAGGT
CAGCCTGGTCTACAGAGTGAGTTCCGGAACAGCCAGGGCTATACAAAGAA
ATCCTGTCTTCGAAAAAACAAAACAAAACAGACAAACAAAAACAAAACAT
AAACTATGCAGGGTGTAGCCAGGTTTGGTGGCATACACCCATATACCGAA
GACTCAGAGTTCTAGGCCATATTTATGTATGGTGGCTGAGGAAGGGCTCC
AGGTCCCCTCAAGGAGGAGAGGATCTGTGTTTTAGTGTCCTGTTGCTGCT
GCAATATGCCGCCACAAGCCTAGGGGCTTAAAACAACATAATTTAATGTC
ATACCCTCCTGTGGACTAGAGGTCTGAAGTTATTCTCACTGTGTTAGAGT
CAAGGTGTGGGCAGGGCCTGTTCCTCCTTCTAAGGGTGTCAGGTAGCTTG
TGACCTTGCCGGTCCCATTACTGATGGTGGTCCTCATTGCCCAGGTTATA
GACTGGGCTTTCTTTCTACTCGAAAGGATAGTAACAATTTCTACTCTTCA
CTCAATGTATAGACGGACTTAAAATTTTCTCTGCCTACTTTGTAAATTGT
TCTAATGCTTCTTTATCGATGCTGGTTTTTTAGTATCTCTTTT
GCTCGATGTAGAGGGGGAGCGCTGGGGGGCGCCTGTTTCGGACGTGTAGG
NGACACNATAGAAGTAGCCACACCATCAGCTCTGNGACTACTGTTCAACT
TCTTGCCATGGAGATGCTATTAACCCCCTTGAGTTCCTGATGTGGGCACT
ACCAGGGACCGCTCACGCATACTGATGGGAGTTTTCTCTTGGGGAATGTA
GGTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTC
ATTTTCTTCTTGGGTTTTAACTGGAACTGTATCAATAAACAGCAGGGGAA
ACGTGGCTGGGGGCAGTTTTTTTTTTTTCTGTTGCTCATCGGCATGTAAG
GCAAGAAATGTTTCCCAAACCATGGCTTTGTACCTCGCATACCTGATTTT
TAATCCTAATTCCACTACTTATCAGCCATATGACTGTACACTAGGCCCTG
GACTTTTTAATGCTTTAGCGTCCTCATCCGCAAAAGGAACACAGCTAGCA
TAGTACAAGCATCTACCGCAGTTGACTGAGGTAATGCATAACTCACGTCA
TTTGTCTAGTGGCGTGTTTTCTTTGACCAAGTTCTCTTCCTCTCTCAGCG
GCGCTGTGATCTCCATCCCCCCATTCATAGGCCTTTCTGCACCACTGCCC
CTTTTTCTTCTTTTTCCCTGTCCGCTCCCTTCCACCCATTTCTGTTTCCC
TGTCATCCTTGTTTCTCCCACCTCCCGTCTCTTTCCTTCTCCTCCCCTCG
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_k01.b1 MSMg01no458_k01.b1 CHROMAT_FILE:
MSMg01no458_k01.b1 PHD_FILE: MSMg01no458_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:17 2005
         (373 letters)



>mm_chr19_44780349_44781121
          Length = 773

 Score =  667 bits (345), Expect = 0.0
 Identities = 366/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaggtggatttctgagttcaaggtcagcctggtctacagagtgagttccggaacagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gcaggtggatttctgagttcaaggtcagcctggtctacagagtgagttccggaacagcca 491

                                                                       
Query: 61  gggctatacaaagaaatcctgtcttcgaaaaaacaaaacaaaacagacaaacaaaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gggctatacaaagaaatcctgtcttcgaaaaaacaaaacaaaacagacaaacaaaaacaa 431

                                                                       
Query: 121 aacataaactatgcagggtgtagccaggtttggtggcatacacccatataccgaagactc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aacataaactaggcagggtgtagccaggtttggtggcatacacccatataccgaagactc 371

                                                                       
Query: 181 agagttctaggccatatttatgtatggtggctgaggaagggctccaggtcccctcaagga 240
           |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 370 agagttctaggccatacttacgtacggtggctgaggaagggctccaggtcccctcaagga 311

                                                                       
Query: 241 ggagaggatctgtgttttagtgtcctgttgctgctgcaatatgccgccacaagcctaggg 300
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 310 ggagaggatctgtgttttagtgtcctgttgctgctgtaatatgccaccacaagcctaggg 251

                                                                       
Query: 301 gcttaaaacaacataatttaatgtcataccctcctgtggactagaggtctgaagttattc 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcttaaaacaacaaaatttaatgtcataccctcctgtggactagaggtctgaagttattc 191

                        
Query: 361 tcactgtgttaga 373
           |||||||||||||
Sbjct: 190 tcactgtgttaga 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no458_k01.g1 MSMg01no458_k01.g1 CHROMAT_FILE:
MSMg01no458_k01.g1 PHD_FILE: MSMg01no458_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:17 2005
         (157 letters)



>mm_chr19_44640092_44640648
          Length = 557

 Score =  242 bits (125), Expect = 9e-69
 Identities = 146/153 (95%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccttgagttcctgatgtgggcactaccagggaccgctcacgcatactgatgggagttttc 61
           ||||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 202 ccttgagttcccgacgtgggcactaccagggactgctcacccatactgatgggagttttc 261

                                                                       
Query: 62  tcttggggaatgtaggttgtatctgcagcagacactcaatgacaccgtggggaggaagat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcttggggaatgtaggttgtatctgcagcagacactcaatgacaccgtggggaggaagat 321

                                            
Query: 122 tgtcattttcttcttgggttttaactggaactg 154
           ||||||   ||||||||||||||||||||||||
Sbjct: 322 tgtcatggacttcttgggttttaactggaactg 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)