Query= MSMg01no458_m01.b1 MSMg01no458_m01.b1 CHROMAT_FILE:
MSMg01no458_m01.b1 PHD_FILE: MSMg01no458_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:26 2005
(331 letters)
>mm_chr19_29609067_29609796
Length = 730
Score = 611 bits (316), Expect = e-179
Identities = 328/332 (98%), Gaps = 2/332 (0%)
Strand = Plus / Plus
Query: 1 aacttctaagcttctactgttccttggatcatacatctataatcccagcacttgggaggc 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aacttctaagcttctactgtttcttggatcatacatctataatcccagcacttgggaggc 259
Query: 61 taaggctcaactgttgcaagt-caaaataagcctgggctacatagcagggtccagtccag 119
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaagctcaactgttgcaagttcaaaataagcctgggctacatagcagggtccagtccag 319
Query: 120 ccagggctacatacttagcaagagctagactgtgtgtggtgcggggagctcatatgaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccagggctacatacttagcaagagctagactgtgtgtggtgcggggagctcatatgaaaa 379
Query: 180 gagtttttagatgtgatatatgtaaattctcattactggcaagcattgataaagctttgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagtttttagatgtgatatatgtaaattctcattactggcaagcattgataaagctttgc 439
Query: 240 attcagtttgatcactaggaataatagctttaaatcctaattaaccaacagactgtgaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attcagtttgatcactaggaataatagctttaaatcctaattaaccaacagactgtgaca 499
Query: 300 attataaaactttaaaaaaaattcttcctctg 331
|||||||||||| |||||||||||||||||||
Sbjct: 500 attataaaactt-aaaaaaaattcttcctctg 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space: 232162
Effective search space used: 232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_m01.g1 MSMg01no458_m01.g1 CHROMAT_FILE:
MSMg01no458_m01.g1 PHD_FILE: MSMg01no458_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:26 2005
(456 letters)
>mm_chr19_29786001_29786860
Length = 860
Score = 806 bits (417), Expect = 0.0
Identities = 451/469 (96%), Gaps = 13/469 (2%)
Strand = Plus / Minus
Query: 1 tcgacctaatgtcagggtaccagtgccttaacactcatccatttctatggagatgtttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tcgacctaatgtcagggtaccagtgccttaacactcatccatttctatggagatgtttgt 765
Query: 61 cctctgattcaatgtgagcatctctagatggggtagactcctgttgttaccacacaggtt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cccctgattcaatgtgagcatctctagatggggtagactcctgttgttaccacacaggtt 705
Query: 121 cctaagcaccacatggtacttctgtctttagcac---g------ggattgcctgcagtct 171
|||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 704 cctaagcaccacatggtacttctgtctttagcacagggctcccaggattgcctgcagtca 645
Query: 172 attgtgagtccaaggagtggccttcggaagcagagctagatttctcacctgctatacctt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 attgtgagtccaaggagtggccttcggaagcagagctagatttctcacctgctatacctt 585
Query: 232 tactgtacattctaatttctctctggtggactcagcccaaacctattgcccatcaaccgg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tactgtacattctaatttctctctggtggactcagcccaaacctattgcccatcaaccgg 525
Query: 292 taatactgttaagagggacactgaggaaaatctgtccacaaggaaaagagatttgtcagt 351
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 524 taatactgttaagagggacactgaggaaaagctgtccacaaggaaaagagatttgtcagt 465
Query: 352 gtgtagtgtgagaggcttggagagctctccagtgaaatgggccttccccatcaagccgtg 411
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 464 gtgtagtgtgagaggcttggagagctctccagtgaaatgggccttcctcatcaagccgtg 405
Query: 412 ggtccctctgaagat----gtgagattcaatggtcttatggagcagggt 456
||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 404 ggtccctctgaagatgtgagtgagattcaatggtcttgtggagcagggt 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 860
Length adjustment: 10
Effective length of query: 446
Effective length of database: 850
Effective search space: 379100
Effective search space used: 379100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
