BAC Information

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BAC

Clone NameMSMg01-458M19
Chromosome19 (Build37)
Map Location 31,715,888 - 31,716,191
singlet/doubletsinglet
Overlap genePrkg1
Upstream geneLOC625995, Cstf2t, 8430431K14Rik
Downstream gene1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458M19.T7 (MSMg01no458_m19.b1)MSMg01-458M19.TJ (MSMg01no458_m19.g1)
ACCAG544544AG544545
length761764
length of high quality
(start - end)
490 (52 - 541)307 (329 - 635)
definitionCHROMAT_FILE: MSMg01no458_m19.b1 PHD_FILE: MSMg01no458_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:30 2005CHROMAT_FILE: MSMg01no458_m19.g1 PHD_FILE: MSMg01no458_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTGAGTATGACAACACAAACAAGTGAGTGTGTGTGGGG
CACTACAGAGGAGCACAAAAAAACACATAGAAATGGAGATAGACACACAC
AGACACACACACACACACACACACACACACACAAATCCCTTAAAGACCCA
AAATCAGAAGCTATAATACATAAGCAACAGACTTGTAGGGTTAAAAAACT
ATGCCAAGACAAAGCATTATGAGACAAAAAACATTCCTCCCAAAACAACA
GTAAGTTCATTTTGTGTTGGCCATCTGCAGTTGGACATAGATCCTGCCCT
TGTATAGTTTGTATGCTAAGAGAGACTCCATTGAAGAAAACTAATTTTTT
TTAATTGCAAGAGGTTATCAATTAGAGATATCTTCAAGATTAGGGATAAG
AGCATGCATCTAGTTCCATCCTCTGAGCTGGGACCCCCTCTGGCTTAGCC
CTGTATAGGGCCTGTGCATACTGCCACACAATCTGAATTGATATGTGTGT
CAATCCTAGTAGATCTAGAAGGTCATGTTTTCTTGATTATCCTCTACTCA
CTCTTGCTCTTGCAGNCTTTCCATTCACAGAGGGCTTCTGCAGGGTTTCC
TGAGCCCAGAGGATAGGGATTTGATAGTGATAACTCATTTAGGACTGTGT
GGTCCCAGGGCCCCCACTCTTGTGGGTTTTGTGAGGAGGGAAAAAAAAAA
ATGTCGATTTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAAAAAATCGTTGATAGCAGCCAAACATGCTTGGCTT
TGTTGCTTTTGGTCATACTCCTGTGTCACAACTATAAGATACCCAAGGGA
GCACATTTCCAGTCAGAGACTTATTTACTCTGTGCCTTAGCACTTTGCAG
GTTTATACCTGGGCCCAACAATACACACAGGTGTCAGATACATTTTAAGA
ACTCTAAACCTTGGGACATTTTATATTTGAAGTAGAAACTGGATCCTGTG
CTTTACTAAAGGCAAGATTTNCTGGTTGAAAAGAAATTGAGGACCTTTGG
CAGAGTCAAAGGACGCATTTGTTACATTTAAATGTATTATTTTCACCTGT
ATTTCAGAAACATAAATGCCATGTTATTAGCCACATTGGGTTTTATAATT
CACTTTCCCCTGGTTTTTTTTTTTTTTCATGCTACCTTCTGTAAGGTATT
TGTATGTGTGGTTATAATAATTGGGAGCAGATAACACAATATCTCATTTA
GTCAAACTATTAATAGATTACTTTAATTTTGTTACTCATCATCATAAGAC
ATTGGGCCCAGGGAAGTTGGCTCAGTGACTCTCAATGTGTGTTAGTCACC
TTTCTGGTGCTGTGAATAACACACCGTGACCAAAGGCAATGTGTAAAAGG
AAGAGTTTATTTGGGGCTTATAGTTCCTTAGGGAGGGCTCCTAATTGCCA
GGCCATCGGTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_m19.g1 MSMg01no458_m19.g1 CHROMAT_FILE:
MSMg01no458_m19.g1 PHD_FILE: MSMg01no458_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:30 2005
         (307 letters)



>mm_chr19_31715688_31716391
          Length = 704

 Score =  571 bits (295), Expect = e-167
 Identities = 303/307 (98%), Gaps = 3/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagaaattgaggacctttggcagagtcaaaggacgcatttgttacatttaaatgtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaagaaattgaggacctttggcagagtcaaaggacgcatttgttacatttaaatgtatt 445

                                                                       
Query: 61  attttcacctgtatttcagaaacataaatgccatgttattagccacattgggttttataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttcacctgtatttcagaaacataaatgccatgttattagccacattgggttttataa 385

                                                                       
Query: 121 ttcactttcccctggttttttttttttttcatgctaccttctgtaaggtatttgtatgtg 180
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcactttcccctgg---tttttttttttcatgctaccttctgtaaggtatttgtatgtg 328

                                                                       
Query: 181 tggttataataattgggagcagataacacaatatctcatttagtcaaactattaatagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggttataataattgggagcagataacacaatatctcatttagtcaaactattaatagat 268

                                                                       
Query: 241 tactttaattttgttactcatcatcataagacattgggcccagggaagttggctcagtga 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 267 tactttaattttgttactcatcatcataagacattgggtccagggaagttggctcagtga 208

                  
Query: 301 ctctcaa 307
           |||||||
Sbjct: 207 ctctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 704
Length adjustment: 9
Effective length of query: 298
Effective length of database: 695
Effective search space:   207110
Effective search space used:   207110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)