BAC Information

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BAC

Clone NameMSMg01-460C02
Chromosome19 (Build37)
Map Location 27,037,537 - 27,037,785
singlet/doubletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
Downstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460C02.T7 (MSMg01no460_c02.b1)MSMg01-460C02.TJ (MSMg01no460_c02.g1)
ACCAG545560AG545561
length745731
length of high quality
(start - end)
234 (59 - 292)494 (66 - 559)
definitionCHROMAT_FILE: MSMg01no460_c02.b1 PHD_FILE: MSMg01no460_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:17 2005CHROMAT_FILE: MSMg01no460_c02.g1 PHD_FILE: MSMg01no460_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGGAATTCTCT
CTTTCACCAGGCTGGTCCCGAACTCAGAAATCCGCTGAGTGAAATATTGC
ACTCTTCCACTATTGCTATCTCAGAACCTAAGTAACTTTTATGTCTTTAA
ATATTTGTTTTATGAACCTAAGAGACTAAAGATACTGCACAAAAATTTAT
ATTCTAGTTGATCCTTGGATAATATGTAGTGAGCTGTTTTTTGTTGTTGT
TTTTTTTTTTTTTTATTATGGTTAGTATTGGTTTGAAGTCTACATGAGCG
TTTTTTTTTAGCNCAGTGCCAGCTTGCTTATGGGTCCCACTTGCTTGGAA
AGGTGATTTCTACTCTGTGGTTCTCATGGGTATGACTGTCTATGCTATCT
CGGCTTGCTTCTTTGGTGAAAACATATAGTTGGTTCGTGTTTCTAATCCA
GCCAGTTATTCTGCATTTTTTACCCTGCCGAACTGAGGCCGTCTGCATTC
ACGGCCCTTATCGATAGTGCATTACTATTTTCCTGCGACTTCTCCCGTCC
TGCTGCTTTCGCTAGCCAGGTTTTATCCTTCCTATTCCCTTTTCTTTGCG
TCTGTTTAGATTTATTTCTTGTCTCTCTCTTTTTCCTTCTGTTGATTTGC
CCCTGTTTTTTGTCTTTTTCCCTTGCTCGTCGTTCCACTTCATAATCCTT
GATTTTTATTTCCAATTTACTCACTAACCCCCTTCTTTCTAATCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAACTAATATGTATAGATACTCTAGTCTCATGAAT
TAGAGCATAATTCCCTATTGCTTATTGCTTAACAGTACGTCAAGCACAGT
CCTTTCCTTCCAAAGAGTATATTTTGGAAAAGGAGTACCAAAGTACATAT
ACTGGAAGCTAAATCATTAGGAAGACATCGACAGACTCCATGTGAGAACA
TTTTTTAAAAAGCATCTTACTAGTACTCCTCAAAAAAAGTTAAGATCATC
AAAAACAAGAGAAACATCAAGAACTGTTACTATCAAGAGGAGCCCAAGGA
GACACGATGCTGCTCATGTTGTAGGATGGCCTAGAGGAGACCCTAGAAAA
GAAAGATGGGGATGTTGGGTAAAACCTGAGAAAGGAGTGTGGAGTGCAGT
TAATGATACTGTATCAACAATAATGCATCCTTGGGCTAAAGATCCAGATC
AATGGTAGAATGCTTGGCTAGTATTTGACAGACCCTAGGTTCAATCCATG
AGAGGCAGAAAAGAAGGGAAGAGAAAGAGGAGGAGGAGGAGGAGGAGGAA
TAGCTATTTTTTCTCCTTCCCTCTTTCTTTTTTCCTTCGTTTCTTCGCTT
CCTCTTTTCCCCCTTTTATTTATATTCATTCCTCCTTCTCATTTCTCTTC
TTTTTTCCTCTATTTTTTCCCGCTCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_c02.b1 MSMg01no460_c02.b1 CHROMAT_FILE:
MSMg01no460_c02.b1 PHD_FILE: MSMg01no460_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:17 2005
         (234 letters)



>mm_chr19_27037337_27037969
          Length = 633

 Score =  389 bits (201), Expect = e-113
 Identities = 233/249 (93%), Gaps = 15/249 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctggtcccgaactcagaaatccgctgagtgaaatattgcactcttccactattgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggctggtcccgaactcagaaatccgctgagtgaaatattgcactcttccactattgcta 260

                                                                       
Query: 61  tctcagaacctaagtaacttttatgtctttaaatatttgttttatgaacctaagagacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcagaacctaagtaacttttatgtctttaaatatttgttttatgaacctaagagacta 320

                                                                       
Query: 121 aagatactgcacaaaaatttatattctagttgatccttggataatatgtagtgagctgtt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 aagatactgcacaaaaatttatattctaattgatccttggataatatgtagtgagctgtt 380

                                                                       
Query: 181 ttt--tgttgttgtt-tt-tt-tt-tt-tt--------tttattatggttagtattggtt 225
           |||  |||||||||| || || || || ||        ||||||||||||||||||||||
Sbjct: 381 tttgttgttgttgttgttgttgttgttgttgttgttgttttattatggttagtattggtt 440

                    
Query: 226 tgaagtcta 234
           |||||||||
Sbjct: 441 tgaagtcta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space:   140400
Effective search space used:   140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)