Query= MSMg01no460_j08.b1 MSMg01no460_j08.b1 CHROMAT_FILE:
MSMg01no460_j08.b1 PHD_FILE: MSMg01no460_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:52 2005
(243 letters)
>mm_chr19_52427062_52427705
Length = 644
Score = 418 bits (216), Expect = e-121
Identities = 237/244 (97%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 ggttgcataataagatgctgtctcaaatcagagaaaagaaaacttaaatatgagcagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ggttgcataataagatgctgtctcaaatcagagaaaagaaaacttaaatgtgagcagaga 260
Query: 61 atgtgttagggaataagtgtgaggggaagtgacgtaggagagggtgagaagcagatgtga 120
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 261 atgtgttagggaataagtgtgaggggaagtgacataggagagggtgagaaacagatgtga 320
Query: 121 taacctttcatcatatatgtgcagactagaaagccccagcaattaccccaaggtcacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacctttcatcatatatgtgcagactagaaagccccagcaattaccccaaggtcacata 380
Query: 181 tttagtaattacaggtaataccgacaattggtattgggtgt-tgatgggtcttcagtaaa 239
||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 381 tttagtaattacaaataataccgaccattggtattgggtgtctgatgggtcttcagtaaa 440
Query: 240 attc 243
||||
Sbjct: 441 attc 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space: 148590
Effective search space used: 148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no460_j08.g1 MSMg01no460_j08.g1 CHROMAT_FILE:
MSMg01no460_j08.g1 PHD_FILE: MSMg01no460_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:52 2005
(480 letters)
>mm_chr19_52614583_52615462
Length = 880
Score = 913 bits (472), Expect = 0.0
Identities = 478/480 (99%)
Strand = Plus / Minus
Query: 1 ttcagttgcaaaattgtttggaaaccttaattagatactgcaaagtgttagtatttttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcagttgcaaaattgtttggaaaccttaattagatactgcaaagtgttagtatttttag 621
Query: 61 ttttgaatttagtatcctaagtccaaatatttaagagttatatatgtaagaagcagaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttgaatttagtatcctaagtccaaatatttaagagttatatatgtaagaagcagaaga 561
Query: 121 ggctgaacaagggagaaaaagaattgagaaacatgattaaaaaaatcatattgtggtgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggctgaacaagggagaaaaagaattgagaaacatgattaaaaaaatcatattgtggtgtc 501
Query: 181 tccacccccacccctggagaaggtatttctttgcttagaagtgaagagataagtcaaact 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tccacccccacccttggagaaggtatttctttgcttagaagtgaagagataagtcaaact 441
Query: 241 gtgtgcagttagttttagctgttctaggttttgagtttcatttactcggaattaatttct 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 gtgtgcagttagttttagctgttctaggttttgagtttcatttactcggcattaatttct 381
Query: 301 ctcacacacagaaatgccagttttatgagaaatatagattcagcctgtttcattctgaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcacacacagaaatgccagttttatgagaaatatagattcagcctgtttcattctgaac 321
Query: 361 acatgaacacgcatttgtaatgcacgagtgaatggaacgttaaagactctacttaagtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acatgaacacgcatttgtaatgcacgagtgaatggaacgttaaagactctacttaagtac 261
Query: 421 caagcatcttcatcatgaatgtgttcctctttcagttccccgctcccaccactggcattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caagcatcttcatcatgaatgtgttcctctttcagttccccgctcccaccactggcattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
