BAC Information

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BAC

Clone NameMSMg01-462H15
Chromosome19 (Build37)
Map Location 53,290,708 - 53,290,994
singlet/doubletsinglet
Overlap geneAdd3
Upstream geneIns1, LOC100043450, Xpnpep1, LOC668545, LOC674277
Downstream gene1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462H15.T7 (MSMg01no462_h15.b1)MSMg01-462H15.TJ (MSMg01no462_h15.g1)
ACCAG547354AG547355
length738750
length of high quality
(start - end)
294 (317 - 610)287 (321 - 607)
definitionCHROMAT_FILE: MSMg01no462_h15.b1 PHD_FILE: MSMg01no462_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:30 2005CHROMAT_FILE: MSMg01no462_h15.g1 PHD_FILE: MSMg01no462_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTTAATTTGCGGCGCTATACGACTCCTATTCATACACGACCGCGGAA
TTCCAAATTTCCGACTGTTGCTTGGAGAGGGGGGGGTGTTCTGTGCAACC
AATTGGGAGAGGCGCCGGTCAGTCATCACTGATCTTCCTCTCCATTTAAG
AGGAAGGACAGGAGTTTTGCCAGCTAAGGAAGCTGCATGCTTCTCCGGTT
TGTTCCAGCTTTTAGGTCAGCTAAGACGAGAGAGTCGTGGCCTGCTCTGC
AAGAACCTATTTTAGGGTCCTGGAGACACTGACTGGATCAGGATATAACT
TGCTGATATTTTTTAGATGTCTTCCAAATGATTATTCCCAACAGCTTCAA
AACTTACTGCTCACTTGGGCTAACGATCGGGCGTTAAAGCGTCCAAACCT
AGCTCCTAACCCTATGTACAAACAAAAACATTCTTCACGTAGGGCTTTTT
CATCTCAGTCGGTGGCTATTCCATGTTTTAAGGGCAAAAATCTTGACGTA
ATATCTGCCTTATTCCCCGGTCCATGCCCCATCTGCCCAAGATCTGCTTG
GTCCTGGCTTCAAAGTAGATCCGTAGCCCCACCCACTTCCATCACGTCAC
CTATCTGGTGTGCATCACTTCCACCTCACCTGTGTGACGCCTGCATAGAA
GCCAGACCGAACCTACCCTTGAGTGTCCACTTGAACATTCCAGAATCGCC
TGGGAGAAAATCCCCTGGCCCTGGCTGGTAGTTTGCCT
CCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTACAGGAGCCAAGTACAACT
TTTAAACTCTAGCANACAAACTTTCCTTTTAAAGCAGCTTCGGGACTGGA
GAGATGGCTCAGTGGTTGAGAACACTGGCTGCGCTTGTAGAGGAGCTGGG
CTCAATTCTTAGAACCCACACAGAGGTTCTCAACTGTCTGTTACTTCGGT
CCCAGAGGAGCCTCTTTGGCCTCTGTACCAGGCACAGATGTGGTGCATAC
ATGCAGGCAAAACTCTTATATACATAAAATTAAAGTAAAATCTAAAAAAA
AAGAAGAAGAAATGAAAAAGCAGCATCATGGAGAAAGGTCGCTTGATGGA
GCCCAAGGGTTGGAGAGAATTGCCCTAGTGCACTCGTGGCCCTGGGCGTG
ACTCCCTCCCAGCTCTTAGAAAATTTAAGAAGGCAGCTTCTCCAAACATA
TTAGAAAAGTTTTTTATGTAGAAAAACATTTTTTAACAACCACAAAAGAA
AATAAAACTTAGATTATAATGCTGTTAGAAATTACTATTTTCAGAGCTAA
TGAAAATTCATGTCTAAATACTGAATTTTTTAAACAAAATATATAATGTT
ACTTATTTTTAATTAATTTAAGGGACTGGAGACATAGCGCAGTGATTAAT
AACAGGTATTGCTCTTGCAGAGGACTCCAGTTTGGTTCCTTAGACCCTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_h15.g1 MSMg01no462_h15.g1 CHROMAT_FILE:
MSMg01no462_h15.g1 PHD_FILE: MSMg01no462_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:30 2005
         (287 letters)



>mm_chr19_53290508_53291194
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacataaaattaaagtaaaatctaaaaaaaaagaagaagaaatgaaaaagcagcatcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tacataaaattaaagtaaaatctaaaaaaaaagaagaagaaatgaaaaagcagcatcatg 428

                                                                       
Query: 61  gagaaaggtcgcttgatggagcccaagggttggagagaattgccctagtgcactcgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gagaaaggtcgcttgatggagcccaagggttggagagaattgccctagtgcactcgtggc 368

                                                                       
Query: 121 cctgggcgtgactccctcccagctcttagaaaatttaagaaggcagcttctccaaacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cctgggcgtgactccctcccagctcttagaaaatttaagaaggcagcttctccaaacata 308

                                                                       
Query: 181 ttagaaaagttttttatgtagaaaaacattttttaacaaccacaaaagaaaataaaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttagaaaagttttttatgtagaaaaacattttttaacaaccacaaaagaaaataaaactt 248

                                                          
Query: 241 agattataatgctgttagaaattactattttcagagctaatgaaaat 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agattataatgctgttagaaattactattttcagagctaatgaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)