BAC Information

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BAC

Clone NameMSMg01-462K18
Chromosome19 (Build37)
Map Location 59,514,759 - 59,734,584
singlet/doubletdoublet
Overlap geneEmx2os, Emx2
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462K18.T7 (MSMg01no462_k18.b1)MSMg01-462K18.TJ (MSMg01no462_k18.g1)
ACCAG547504AG547505
length771798
length of high quality
(start - end)
338 (78 - 415)436 (78 - 513)
definitionCHROMAT_FILE: MSMg01no462_k18.b1 PHD_FILE: MSMg01no462_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:45 2005CHROMAT_FILE: MSMg01no462_k18.g1 PHD_FILE: MSMg01no462_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,514,759 - 59,515,096)(59,734,152 - 59,734,584)
sequence
NNCCATTCTATAATTGCGGCGCTAATACGACTCCTATATTCAGAGAACCG
CGGAATTCACACAGGTTCCCTGGATACAGCTAGTTTTTTTTTTCTTATAT
TAGGATGAACAACTTAGAAATATAGAATGGAAAACCATTCTACTTACTAG
AACAAAACAAAAGCATAAGACACCATCAGGACTGAAAAGATGACTCTTTC
ATGCCTCAAATATCCAAGACCCGGTCAGAACCGAAGAATGAATGTATCAA
AATCTAAATGTTTCTGGTTGGGATGCTTGACCATGGTAAAGGCTACAACC
TTTCCCCAAATTATTTTATACTATTTACACAATCGTAGTATAGTTTAAAA
TTAAAGTAACTGGCAGATTGATTCTAAAAATTATCTCAGAGAATAGATAC
GTAAGAACAGACAAAAAATTACCAAAAAAAAAGAAAAACGAGGTGAAATT
GTTCTAGTTGATTTTTAAAAGTATGTTACAAAGTGAAACAACATAAAATG
TAACGTAGGATAAAATCCAGTAGGCCAATACTATAAAATATAACACCTAG
AATGAGGCAGAGGTTGTTTCCTACAACAGAAAAAGGTTATCTGTTACCAG
CATGTTGTTGGAAAAAACTGTTTAATTTGTTTGAATAAAAAAAAGCTTTT
TTTTGTTTTTTGACCCCCTTCCCAAGAAAAAAAAAATCTAAGTTTCTTAT
AAGGGGGGAACAATATTTGGTAAAAAATAAATAAATGGGGCTCCAAGATA
GTGCCTAGTGATATAAAATTA
NTTTCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTACTGCTCCTTGTCCACT
TAGAGCCCTCCCTACTGGAGGTTTAGAAGATCTTTGGAAACTGGCAGCTA
AGCAAACAGGCAGAAATGCACAGAAAGACCTGGGATATCATCAAATGGCT
CAAAGGCTTGAGATTTCCAATAAAAAGGAAGCACACGGTTCAAAGAATTA
GGTAAGATACACACCCTGTGTGAGTGTGCCACAGAACTTCAGGAGCTATC
AAGATAGCAAAGTACAACAGGTTGTATTAACGTGAACACAAGCCAGAAAA
CCTGTAAGGATCGAGACTCCACTGATGCTATGTGTTAGTAAAACCTGTGC
TGGTCATCTTTCCATCACTACAATAAATATCTGAGCTAATTAACTTATAG
AGCAGAAAGGTTCACTTGGGTTCCCAGTGTTGAAGGTCCAGTCCAAACTG
GATAGATCTGCGGCTTTGAAGTTCCTGGCGGGGGGTGTCATGCTTTTTTT
TTATTTTCTTCTTTCTCCCCCCCCTTTTCCTCCCTTCTTTTCTCTTCTCT
TCCTTGCCCCCCCTTCTTCTTCCCTTTCTCCCCTTCTTCATTTTCTTCAT
TTTCTTCCTCTCTTTTCCTCTTTCCTCCCATTTTCTTCTCCTCTGCCTCT
TCCTTCCCCTCCTTTCCATTTCCTTTCCTTCACTCTTTTCCACCTTCTCT
CCTTTTTTCTTCCTTATTCTTCTTTTCCTTTTCTTTCTTCACTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_k18.b1 MSMg01no462_k18.b1 CHROMAT_FILE:
MSMg01no462_k18.b1 PHD_FILE: MSMg01no462_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:45 2005
         (338 letters)



>mm_chr19_59514559_59515296
          Length = 738

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctagttttttttttcttatattaggatgaacaacttagaaatatagaatggaaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctagttttttttttcttatattaggatgaacaacttagaaatatagaatggaaaacca 260

                                                                       
Query: 61  ttctacttactagaacaaaacaaaagcataagacaccatcaggactgaaaagatgactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctacttactagaacaaaacaaaagcataagacaccatcaggactgaaaagatgactct 320

                                                                       
Query: 121 ttcatgcctcaaatatccaagacccggtcagaaccgaagaatgaatgtatcaaaatctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatgcctcaaatatccaagacccggtcagaaccgaagaatgaatgtatcaaaatctaa 380

                                                                       
Query: 181 atgtttctggttgggatgcttgaccatggtaaaggctacaacctttccccaaattatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtttctggttgggatgcttgaccatggtaaaggctacaacctttccccaaattatttt 440

                                                                       
Query: 241 atactatttacacaatcgtagtatagtttaaaattaaagtaactggcagattgattctaa 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacaatttacacaatcgtagtatagtttaaaattaaagtaactggcagattgattctaa 500

                                                 
Query: 301 aaattatctcagagaatagatacgtaagaacagacaaa 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattatctcagagaatagatacgtaagaacagacaaa 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no462_k18.g1 MSMg01no462_k18.g1 CHROMAT_FILE:
MSMg01no462_k18.g1 PHD_FILE: MSMg01no462_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:45 2005
         (436 letters)



>mm_chr19_59733952_59734787
          Length = 836

 Score =  814 bits (421), Expect = 0.0
 Identities = 430/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggctactgctccttgtccacttagagccctccctactggaggtttagaagatctttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaggctactgctccttgtccacttagagccctccctactggaggtttagaagatctttgg 574

                                                                       
Query: 61  aaactggcagctaagcaaacaggcagaaatgcacagaaagacctgggatatcatcaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aaactggcagctaagcaaacaggcagaaatgcacagaaagacctgggatatcatcaaatg 514

                                                                       
Query: 121 gctcaaaggcttgagatttccaataaaaaggaagcacacggttcaaagaattaggtaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gctcaaaggcttgagatttccaataaaaaggaagcacacggttcaaagaattaggtaaga 454

                                                                       
Query: 181 tacacaccctgtgtgagtgtgccacagaacttcaggagctatcaagatagcaaagtacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tacacaccctgtgtgagtgtgccacagaacttcaggagctatcaagatagcaaagtacaa 394

                                                                       
Query: 241 caggttgtattaacgtgaacacaagccagaaaacctgtaaggatcgagactccactgatg 300
           |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cagggtgtacaaacgtgaacacaagccagaaaacctgtaaggatcgagactccactgatg 334

                                                                       
Query: 301 ctatgtgttagtaaaacctgtgctggtcatctttccatcactacaataaatatctgagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctatgtgttagtaaaacctgtgctggtcatctttccatcactacaataaatatctgagct 274

                                                                       
Query: 361 aattaacttatagagcagaaaggttcacttgggttcccagtgttgaaggtccagtccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aattaacttatagagcagaaaggttcacttgggttcccagtgttgaaggtccagtccaaa 214

                        
Query: 421 ctggatagatctg 433
           |||||||||||||
Sbjct: 213 ctggatagatctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)