BAC Information

Click to search

BAC

Clone NameMSMg01-462L03
Chromosome19 (Build37)
Map Location 22,153,575 - 22,153,922
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneTrpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462L03.T7 (MSMg01no462_l03.b1)MSMg01-462L03.TJ (MSMg01no462_l03.g1)
ACCAG547522AG547523
length758766
length of high quality
(start - end)
---350 (75 - 424)
definitionCHROMAT_FILE: MSMg01no462_l03.b1 PHD_FILE: MSMg01no462_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:47 2005CHROMAT_FILE: MSMg01no462_l03.g1 PHD_FILE: MSMg01no462_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTCAATNTNNNNNCNNNNNNCNNNCNNNNNTTCCAACCCCCNNNNNCNN
NNNNTTTCACNACNNCNNNNNNANNNNNNNCNNNNNANNNCANNNNNAAT
TCTCTTTTTGTTTTTGTTCTGCTGTGTTAACTATTAACTATACGTCTTAG
TGACATAAGCTTTTAAAATGATGAATTATACTAGTTTTATTCAGTTANNN
NNCCNNNNNNNNNNNNCCCCNNNNNNNNCNCCCCNNCNNNNNNNNCNCCN
NNNNCNNNNNNNCNCNNNNNNCCCCCCCCCNNNNNNTTTTTTTNCNNNNN
NNNNNCCCCCCCCCNNNNNCCCCCNCNNNNNCCCCCCNCCCCCCCCCNNN
CCNNCNCCNCNCCCCNCCCCNNCCCTCCCCNCCCCCCCCCCNCCCCCNNC
NCCCCNNNNNNCCCCCNCCCCCCNNNNCCCCNCNCCNNCCCCCNNNNCCC
CCNNCCCNNNNNNNCNNCNCNNNCCCCNNNNNCCCCCCCCCCCCNNCCCC
CCCNNTNTCCCCCCNTTCCNCNCCCCNCCNNNNCCNNCCCNCCNCCNCCT
CCCCCCCCCNCNNNNNCCCNCCCCCCCCNTNTCNTCCCCCCCCCCCNNNN
CCNNCCCCCCCNTCTCCCCCCTTCCNNNCCCCTNCCCTTCCCCNNCCCCC
NCCNCCCNCCCNNNNCCCNCCCCCCCCCCCCNNTCCCCNCNNNCCCCCCC
NCNCCCCCCTCCCNCCCCCCCCCTCTCCCTTCCTCTCCTCTCTTCTTTTC
TCTTCCCC
TCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCGCAATTCATGAAGCAAGAAGGCCTAAGCT
ATGGAGCGGGGGATAGAAAAGGAAACATGGTGAAGGATAAATAACTCTAA
ATACCTTTGGGGAAAGGCATTGGAAACATACCTACTACTGTACATGATTC
CTGACAAAAAGAGAGAATTTTTTATCCTACAAAAGCCACAATATATCAAA
TAGAAAGCCTGGTGCTAGGAATAAGTTTCTTCTGGAGTCGTTGGCCACTG
AAGTCCTGTAGACCCCCAAACATTACAGGTTATTTCAATGTTATTGTTTG
CCCTCTAAAACCTGACAGTAAATCCATATTGACGAGGATACTACATACCT
GCCTGAGACACAGAACATTAAGAATATGGAGCCGGTATTGACCTACAAGG
TCATTCCTACTGGCTTGCTTTTGTACTTCTAGAAGGCGCTATGTTTACCA
CTATAGGATAAAAATTGTCACTGATATTACACAGGTGTGACTCCTTCCAG
TCTATACATTTTTCTCCCTAATGCTCTTGCTTGCAAAATTGGTCTACTCA
TCTTGTTTAGTTATCACCCCACCATTCTTCTGGCCTAATTTCGTTCCTTC
TCTTATATCTACTTTTCACACTCTATCATCCTTCTTTGTTTCTCGTACTA
ATGTGCTTTTCTTTATTCCCTTTTCTCACTCTTTGCCCTTTTCACTCCTC
CTACTATTCCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_l03.g1 MSMg01no462_l03.g1 CHROMAT_FILE:
MSMg01no462_l03.g1 PHD_FILE: MSMg01no462_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:47 2005
         (350 letters)



>mm_chr19_22153568_22154317
          Length = 750

 Score =  605 bits (313), Expect = e-177
 Identities = 340/349 (97%), Gaps = 2/349 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatgaagcaagaaggcctaagctatggagcggggg-atagaaaaggaaacatggtga 59
           |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 355 attcatgaagcaagaaggcctaagctatggag-gggggtatagaagaggaaacatggtga 297

                                                                       
Query: 60  aggataaataactctaaatacctttggggaaaggcattggaaacatacctactactgtac 119
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aggatacataactctaaatacctttggggaaaggcattggaaacatacctactactgtac 237

                                                                       
Query: 120 atgattcctgacaaaaagagagaattttttatcctacaaaagccacaatatatcaaatag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atgattcctgacaaaaagagagaattttttatcctacaaaagccacaatatatcaaatag 177

                                                                       
Query: 180 aaagcctggtgctaggaataagtttcttctggagtcgttggccactgaagtcctgtagac 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 176 aaagcctggtgctaggaataagtttcttctggagttgttggccactgaagtcctgtagat 117

                                                                       
Query: 240 ccccaaacattacaggttatttcaatgttattgtttgccctctaaaacctgacagtaaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ccccaaacattacaggttatttcaatgttattgtttgccctctaaaacctgacagtaaat 57

                                                            
Query: 300 ccatattgacgaggatactacatacctgcctgagacacagaacattaag 348
           ||||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct: 56  ccatattgatgaagatactacatacctgcctgagatacagaacattaag 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)